RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SETD4Q9NVD3 440 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 RNF186Q9NXI6 227 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 MAP3K20Q9NYL2 800 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 WSB2Q9NYS7 404 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 C9orf78Q9NZ63 289 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 CWC15Q9P013 229 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 RCC2Q9P258 522 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 MARCH4Q9P2E8 410 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 UBA2Q9UBT2 640 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 STK39Q9UEW8 545 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 OR14J1Q9UGF5 321 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 NOL12Q9UGY1 213 aaKnown RBP eCLIP0.4□□□□□ -2.35
VPS35-212ENST00000640313 ZDHHC2Q9UIJ5 367 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 TSPYL4Q9UJ04 414 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 HAO1Q9UJM8 370 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 FBXW11Q9UKB1 542 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 SLC13A4Q9UKG4 626 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 B3GALT5Q9Y2C3 310 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 KLHL20Q9Y2M5 609 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 ZNF256Q9Y2P7 627 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 WBP11Q9Y2W2 641 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 TMEM98Q9Y2Y6 226 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 LYVE1Q9Y5Y7 322 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 KCNE2Q9Y6J6 123 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 PIAS3Q9Y6X2 628 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 MAU2Q9Y6X3 613 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 FLT1P17948 1338 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 MYH15Q9Y2K3 1946 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 IGHV4-61A0A0C4DH41 118 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 FAM237BA0A1B0GVD1 139 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 PRSS51A0A1B0GVH4 220 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 A0A1W2PPH5 198 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 LNP1A1A4G5 178 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 MEX3AA1L020 520 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 PGPEP1LA6NFU8 196 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 TMEM221A6NGB7 291 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 MSGN1A6NI15 193 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 HEPACAM2A8MVW5 462 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 MAGEB17A8MXT2 336 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 FAM220BPB1ANY3 271 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 EPM2AB3EWF7 344 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 TCP11X1B4DZS4 312 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 ANKRD66B4E2M5 251 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 F5H0A9 414 aaPredicted RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 J3KRW8 73 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 J3QR06 171 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 HS3ST1O14792 307 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 SCAMP1O15126 338 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 TO15178 435 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 TPD52L2O43399 206 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 BUD23O43709 281 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 GPR137BO60478 399 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 USO1O60763 962 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 PTP4A3O75365 173 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 SLC25A12O75746 678 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 EIF3JO75822 258 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 AP2A2O94973 939 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 CSPG5O95196 566 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 RTN3O95197 1032 aaPredicted RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 IPO7O95373 1038 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 DDX58O95786 925 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 WDPCPO95876 746 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 SCGB1D1O95968 90 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 CLPTM1O96005 669 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 IGHV3-13P01766 116 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 IGHV4-59P01825 116 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 NR3C1P04150 777 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 EIF2S1P05198 315 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 TFAP2AP05549 437 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 LIPFP07098 398 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 HMGB1P09429 215 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 ACP2P11117 423 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 GABRB1P18505 474 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 ANXA7P20073 488 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 CA4P22748 312 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 NFKBIAP25963 317 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 ITGA3P26006 1051 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 PON1P27169 355 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 HNF4AP41235 474 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 PAFAH1B1P43034 410 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 MSH2P43246 934 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 NKX2-1P43699 371 aaPredicted RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 CAMPP49913 170 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 SUOXP51687 545 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 RPS3AP61247 264 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 LYZP61626 148 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 DCAF7P61962 342 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 CXCL9Q07325 125 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 CDC16Q13042 620 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 GAGE2BQ13066 116 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 PRKAA1Q13131 559 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 GPR17Q13304 367 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 DCTN2Q13561 401 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 ACVR2BQ13705 512 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 PDE1CQ14123 709 aaPredicted RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 MED22Q15528 200 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 GAGE2EQ4V326 116 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 TMEM35AQ53FP2 167 aa0.39□□□□□ -2.35
VPS35-212ENST00000640313 FASTKD1Q53R41 847 aaKnown RBP0.39□□□□□ -2.35
VPS35-212ENST00000640313 SPDYCQ5MJ68 293 aa0.39□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms