RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 MBTPS2O43462 519 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TBX18O95935 607 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 MSL3P1P0C860 447 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 ZCCHC18P0CG32 403 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 POLR2CP19387 275 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 CAPZA1P52907 286 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 HSF2Q03933 536 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 LRRC73Q5JTD7 316 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 ARL9Q6T311 187 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 ZNF621Q6ZSS3 439 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 OR52L1Q8NGH7 329 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TFGQ92734 400 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 EZH1Q92800 747 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TSACCQ96A04 125 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 PPP1R10Q96QC0 940 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 EPHX3Q9H6B9 360 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 FLRT1Q9NZU1 646 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 PHF11Q9UIL8 331 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 AP3M1Q9Y2T2 418 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SCN4AP35499 1836 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 NSG1A0A0A6YYJ2 146 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 A0A1B0GTH6 734 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 FAM25AB3EWG3 89 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 FAM25CB3EWG5 89 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 FAM25GB3EWG6 89 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 F8VZ95 297 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 CPNE6O95741 557 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 CRYBA1P05813 215 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 BMP1P13497 986 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 S100A3P33764 101 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 CXADRP78310 365 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 HEPACAMQ14CZ8 416 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 LARS2Q15031 903 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SLC1A5Q15758 541 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 LIN54Q6MZP7 749 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 ZNF783Q6ZMS7 281 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SPOCD1Q6ZMY3 1216 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 RELL1Q8IUW5 271 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 MINDY1Q8N5J2 469 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 PELOQ9BRX2 385 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 ZNF670Q9BS34 389 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 AARSD1Q9BTE6 412 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 OBP2AQ9NY56 170 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 GRIN2DO15399 1336 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 C15orf38-AP3S2A0A0A6YYH1 394 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 A0A0G2JND7 137 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 IGLON5A6NGN9 336 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 PTGES3LE9PB15 166 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 B4GAT1O43505 415 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 ZNF28P17035 718 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 UPP1Q16831 310 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TANGO2Q6ICL3 276 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 RAB11FIP2Q7L804 512 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 CIR1Q86X95 450 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 RBM12BQ8IXT5 1001 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 HDAC10Q969S8 669 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 ZNF599Q96NL3 588 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TEFMQ96QE5 360 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 KCNK16Q96T55 309 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SNRNP25Q9BV90 132 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TIMMDC1Q9NPL8 285 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 UBAP1Q9NZ09 502 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 LRIT1Q9P2V4 623 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 A0A0A0MRY4 1105 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TRGV8A0A0C4DH27 118 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 PJA2O43164 708 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SIN3BO75182 1162 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 LYNP07948 512 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 ARSAP15289 507 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 ZNF3P17036 446 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 NDUFV2P19404 249 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 IL32P24001 234 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 MNX1P50219 401 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 IRX1P78414 480 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 LGALS3BPQ08380 585 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 GPR33Q49SQ1 333 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SMPDL3AQ92484 453 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 PHF21BQ96EK2 531 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SPATA13Q96N96 652 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 CATSPER2Q96P56 530 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TUBGCP5Q96RT8 1024 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 MIPEPQ99797 713 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 PITPNM3Q9BZ71 974 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 LTB4R2Q9NPC1 389 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 USE1Q9NZ43 259 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 WASF2Q9Y6W5 498 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 PHRF1Q9P1Y6 1649 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 UBR2Q8IWV8 1755 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 A0A1B0GVT2 93 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TLR4O00206 839 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 GLRA3O75311 464 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 TNFSF15O95150 251 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 EPN2O95208 641 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 APOC1P02654 83 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 ADSLP30566 484 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 HOXC13P31276 330 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 CBX5P45973 191 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 IST1P53990 364 aa4.94□□□□□ -1.62
SCN1A-218ENST00000640036 EEFSECP57772 596 aaKnown RBP4.94□□□□□ -1.62
SCN1A-218ENST00000640036 SMCO1Q147U7 214 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms