RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 KCNK13Q9HB14 408 aa18.05■□□□□ 0.48
CLN3-254ENST00000637050 PNPOQ9NVS9 261 aa18.05■□□□□ 0.48
CLN3-254ENST00000637050 SLC17A4Q9Y2C5 497 aa18.05■□□□□ 0.48
CLN3-254ENST00000637050 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.05■□□□□ 0.48
CLN3-254ENST00000637050 POM121BA6NF01 834 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 LRRC14BA6NHZ5 514 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 FPGTO14772 594 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 GRID2O43424 1007 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 SUPT7LO94864 414 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 IGHV4-34P06331 123 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 RPS17P08708 135 aaKnown RBP18.04■□□□□ 0.48
CLN3-254ENST00000637050 VCLP18206 1134 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 EEF1DP29692 281 aaKnown RBP18.04■□□□□ 0.48
CLN3-254ENST00000637050 CD6P30203 668 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 NAA20P61599 178 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 PLOD1Q02809 727 aaPredicted RBP18.04■□□□□ 0.48
CLN3-254ENST00000637050 PRKAA1Q13131 559 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 CDKL4Q5MAI5 379 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 KIAA0895LQ68EN5 471 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 FOXR1Q6PIV2 292 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 UBE2R2Q712K3 238 aaPredicted RBP18.04■□□□□ 0.48
CLN3-254ENST00000637050 RPS27LQ71UM5 84 aaKnown RBP18.04■□□□□ 0.48
CLN3-254ENST00000637050 CFAP206Q8IYR0 622 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 OXR1Q8N573 874 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 SKA2Q8WVK7 121 aaPredicted RBP18.04■□□□□ 0.48
CLN3-254ENST00000637050 RMI1Q9H9A7 625 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 PARVBQ9HBI1 364 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 MARCOQ9UEW3 520 aaPredicted RBP18.04■□□□□ 0.48
CLN3-254ENST00000637050 DCTN4Q9UJW0 460 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 PDE10AQ9Y233 779 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 SIT1Q9Y3P8 196 aa18.04■□□□□ 0.48
CLN3-254ENST00000637050 CACNB4O00305 520 aaPredicted RBP18.03■□□□□ 0.48
CLN3-254ENST00000637050 KMOO15229 486 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 FUCA1P04066 466 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 S100BP04271 92 aaPredicted RBP18.03■□□□□ 0.48
CLN3-254ENST00000637050 CEACAM5P06731 702 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 KITP10721 976 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 PDHA2P29803 388 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 AGTR2P50052 363 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 KIAA1024LP59773 190 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 CDKL1Q00532 357 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 MTAPQ13126 283 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 ZSCAN26Q16670 478 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 AMZ2Q86W34 360 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 WDR75Q8IWA0 830 aaKnown RBP18.03■□□□□ 0.48
CLN3-254ENST00000637050 BMFQ96LC9 184 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 SIKE1Q9BRV8 207 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 TPSD1Q9BZJ3 242 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 EBF2Q9HAK2 575 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 PTBP2Q9UKA9 531 aaKnown RBP18.03■□□□□ 0.48
CLN3-254ENST00000637050 PRKAB1Q9Y478 270 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 IGHV1OR15-9A0A0B4J2B8 117 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 KLHL33A6NCF5 533 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 H3BM21 787 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 PSIP1O75475 530 aaKnown RBP18.03■□□□□ 0.48
CLN3-254ENST00000637050 MPSTP25325 297 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 AKT2P31751 481 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 MAPK9P45984 424 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 RPIAP49247 311 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 CCR3P51677 355 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 CLDN2P57739 230 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 ZXDAP98168 799 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 PCBP2Q15366 365 aaKnown RBP eCLIP18.03■□□□□ 0.48
CLN3-254ENST00000637050 PLA2G4EQ3MJ16 856 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 ANKS6Q68DC2 871 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 SULT1C3Q6IMI6 304 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 CAMKK1Q8N5S9 505 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 TMEM145Q8NBT3 493 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 SCARF2Q96GP6 870 aaPredicted RBP18.03■□□□□ 0.48
CLN3-254ENST00000637050 PLCD4Q9BRC7 762 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 GPR174Q9BXC1 333 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 DPEP2Q9H4A9 486 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 EML4Q9HC35 981 aaKnown RBP18.03■□□□□ 0.48
CLN3-254ENST00000637050 KCNK4Q9NYG8 393 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 SLC23A2Q9UGH3 650 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 ZDHHC2Q9UIJ5 367 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 USH1CQ9Y6N9 552 aa18.03■□□□□ 0.48
CLN3-254ENST00000637050 TRIOO75962 3097 aa18.02■□□□□ 0.48
CLN3-254ENST00000637050 A0A0G2JND7 137 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 GUCA1CO95843 209 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 ALOX15P16050 662 aaPredicted RBP18.02■□□□□ 0.47
CLN3-254ENST00000637050 RPL14P50914 215 aaKnown RBP18.02■□□□□ 0.47
CLN3-254ENST00000637050 HK2P52789 917 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 PFN3P60673 137 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 ABRQ12979 859 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 RPA4Q13156 261 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 NFE2L1Q14494 772 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 FBXO48Q5FWF7 155 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 GCNT7Q6ZNI0 430 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 FAM83HQ6ZRV2 1179 aaPredicted RBP18.02■□□□□ 0.47
CLN3-254ENST00000637050 FRMD1Q8N878 549 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 ZNF483Q8TF39 744 aaPredicted RBP18.02■□□□□ 0.47
CLN3-254ENST00000637050 UBTD2Q8WUN7 234 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 RLN3Q8WXF3 142 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 RHBDF1Q96CC6 855 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 NSUN5Q96P11 429 aaKnown RBP18.02■□□□□ 0.47
CLN3-254ENST00000637050 IER2Q9BTL4 223 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 TRIM54Q9BYV2 358 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 ZNHIT2Q9UHR6 403 aa18.02■□□□□ 0.47
CLN3-254ENST00000637050 PCTPQ9UKL6 214 aa18.02■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms