RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ABCG1P45844 678 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 KRT33BQ14525 404 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 CLCA4Q14CN2 919 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 RPE65Q16518 533 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 TTLL9Q3SXZ7 439 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 KBTBD12Q3ZCT8 623 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 PPM1JQ5JR12 505 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 UGT3A1Q6NUS8 523 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 ZNF549Q6P9A3 640 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 XKR5Q6UX68 686 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 NAPRTQ6XQN6 538 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 CCNI2Q6ZMN8 369 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 PDZD3Q86UT5 571 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 RBM12BQ8IXT5 1001 aaKnown RBP18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 ZBTB2Q8N680 514 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 PPM1NQ8N819 430 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 GPATCH11Q8N954 259 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 FAM136AQ96C01 138 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 CYTH2Q99418 400 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 CPNE1Q99829 537 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 SMYD2Q9NRG4 433 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 ZNF624Q9P2J8 865 aaPredicted RBP18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 PSAT1Q9Y617 370 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 UNC13CQ8NB66 2214 aa18.69■□□□□ 0.58
SQSTM1-216ENST00000626660 CXorf49A8MYA2 514 aaPredicted RBP18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 GPC4O75487 556 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 KRT37O76014 449 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 FAM153BP0C7A2 387 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 PDHA2P29803 388 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 GP5P40197 560 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 SLC19A1P41440 591 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 PMS2P54278 862 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 UBE2IP63279 158 aaKnown RBP18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 E2F1Q01094 437 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 ERCC6LQ2NKX8 1250 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 FAM153CQ494X1 144 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 PERM1Q5SV97 790 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 CAPRIN2Q6IMN6 1127 aaKnown RBP18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 ZC3HC1Q86WB0 502 aaKnown RBP18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 SPDYE1Q8NFV5 336 aaPredicted RBP18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 INSM2Q96T92 566 aaPredicted RBP18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 NDNQ99608 321 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 SLC38A3Q99624 504 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 ABCG4Q9H172 646 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 RHOJQ9H4E5 214 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 LATS2Q9NRM7 1088 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 TAS2R13Q9NYV9 303 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 KLHL42Q9P2K6 505 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 TRMT6Q9UJA5 497 aaKnown RBP18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 COLEC10Q9Y6Z7 277 aa18.68■□□□□ 0.58
SQSTM1-216ENST00000626660 PPM1DO15297 605 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 PIAS1O75925 651 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 MYBL2P10244 700 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 NDUFS1P28331 727 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 SKIV2L2P42285 1042 aaKnown RBP18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 GPR3P46089 330 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 RBM20Q5T481 1227 aaKnown RBP18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 FAM45BPQ6NSW5 357 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 WDR93Q6P2C0 686 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 ZNF438Q7Z4V0 828 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 SLC22A15Q8IZD6 547 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 Q8N9G6 341 aaPredicted RBP18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 FAM45AQ8TCE6 357 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 SKA2Q8WVK7 121 aaPredicted RBP18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 TFGQ92734 400 aaPredicted RBP18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 ATXN7L3BQ96GX2 97 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 GPR21Q99679 349 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 CCDC3Q9BQI4 270 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 ACSS3Q9H6R3 686 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 TOR4AQ9NXH8 423 aa18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 CFAP20Q9Y6A4 193 aaKnown RBP18.67■□□□□ 0.58
SQSTM1-216ENST00000626660 A0A087WUV0 522 aaPredicted RBP18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 SLCO2B1O94956 709 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 C1QAP02745 245 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 ALDH4A1P30038 563 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 ATP5DP30049 168 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 SPRP35270 261 aaPredicted RBP18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 PPM1FP49593 454 aaPredicted RBP18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 CLCN7P51798 805 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 VSNL1P62760 191 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 NR1D2Q14995 579 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 HECTD2Q5U5R9 776 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 SLCO6A1Q86UG4 719 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 SIDT2Q8NBJ9 832 aaKnown RBP18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 WDR48Q8TAF3 677 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 INPP5DQ92835 1189 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 VPS39Q96JC1 886 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 ELMO2Q96JJ3 720 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 FUT8Q9BYC5 575 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 MVB12BQ9H7P6 319 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 UCK1Q9HA47 277 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 SLC40A1Q9NP59 571 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 KCNK4Q9NYG8 393 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 RABGEF1Q9UJ41 708 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 CDYLQ9Y232 598 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 VWA7Q9Y334 891 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 DHRS7Q9Y394 339 aa18.66■□□□□ 0.58
SQSTM1-216ENST00000626660 FAM95CA0A1B0GW59 222 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms