RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 CRY1Q16526 586 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 TTLL9Q3SXZ7 439 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 ZNF805Q5CZA5 627 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 PAGE3Q5JUK9 113 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 HABP4Q5JVS0 413 aaKnown RBP14.19□□□□□ -0.14
VRK3-217ENST00000599538 C6orf10Q5SRN2 563 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 SULT1C3Q6IMI6 304 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 PARS2Q7L3T8 475 aaKnown RBP14.19□□□□□ -0.14
VRK3-217ENST00000599538 SPATA19Q7Z5L4 167 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 NPAS3Q8IXF0 933 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 ETFBKMTQ8IXQ9 262 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 LILRA2Q8N149 483 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 ASB9Q96DX5 294 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 ECSITQ9BQ95 431 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 OPTCQ9UBM4 332 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 YBX2Q9Y2T7 364 aaKnown RBP14.19□□□□□ -0.14
VRK3-217ENST00000599538 RNF11Q9Y3C5 154 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 CCL27Q9Y4X3 112 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 PLXNA2O75051 1894 aa14.19□□□□□ -0.14
VRK3-217ENST00000599538 NUP210Q8TEM1 1887 aaPredicted RBP14.19□□□□□ -0.14
VRK3-217ENST00000599538 A0A1W2PQ67 120 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 TSPAN11A1L157 253 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 LOC730098B7Z3J9 87 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 PLK4O00444 970 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 NME4O00746 187 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 LSM1O15116 133 aaKnown RBP14.18□□□□□ -0.14
VRK3-217ENST00000599538 HOXC11O43248 304 aaPredicted RBP14.18□□□□□ -0.14
VRK3-217ENST00000599538 OTCP00480 354 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 OR56A5P0C7T3 313 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 CYP2A6P11509 494 aaPredicted RBP14.18□□□□□ -0.14
VRK3-217ENST00000599538 ZNF30P17039 623 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 TRIP10Q15642 601 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 RFTN2Q52LD8 501 aaPredicted RBP14.18□□□□□ -0.14
VRK3-217ENST00000599538 HENMT1Q5T8I9 393 aaKnown RBP14.18□□□□□ -0.14
VRK3-217ENST00000599538 CYP2R1Q6VVX0 501 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 HACD2Q6Y1H2 254 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 EFL1Q7Z2Z2 1120 aaKnown RBP14.18□□□□□ -0.14
VRK3-217ENST00000599538 SPATA24Q86W54 205 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 PROKR1Q8TCW9 393 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 SKA2Q8WVK7 121 aaPredicted RBP14.18□□□□□ -0.14
VRK3-217ENST00000599538 SPDL1Q96EA4 605 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 BRINP2Q9C0B6 783 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 ACTL8Q9H568 366 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 COPS7BQ9H9Q2 264 aaPredicted RBP14.18□□□□□ -0.14
VRK3-217ENST00000599538 RDH14Q9HBH5 336 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 SLAMF8Q9P0V8 285 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 SUCOQ9UBS9 1254 aaKnown RBP14.18□□□□□ -0.14
VRK3-217ENST00000599538 PSMD13Q9UNM6 376 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 NDUFAF1Q9Y375 327 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 K7EPI3 171 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 SPINT1O43278 529 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 ATP6AP1LQ52LC2 224 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 UBE2R2Q712K3 238 aaPredicted RBP14.18□□□□□ -0.14
VRK3-217ENST00000599538 PQLC1Q8N2U9 271 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 LILRA3Q8N6C8 439 aaPredicted RBP14.18□□□□□ -0.14
VRK3-217ENST00000599538 FOXJ1Q92949 421 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 PYCR2Q96C36 320 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 ULK4Q96C45 1275 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 ASB16Q96NS5 453 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 ARL15Q9NXU5 204 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 COQ6Q9Y2Z9 468 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 ANGPTL3Q9Y5C1 460 aa14.18□□□□□ -0.14
VRK3-217ENST00000599538 BBIP1A8MTZ0 92 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 KPNA3O00505 521 aaPredicted RBP14.17□□□□□ -0.14
VRK3-217ENST00000599538 ANGPT2O15123 496 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 RSL1D1O76021 490 aaKnown RBP14.17□□□□□ -0.14
VRK3-217ENST00000599538 CBSLP0DN79 551 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 G6PDP11413 515 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 HMOX2P30519 316 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 CBSP35520 551 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 MMP12P39900 470 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 AQP4P55087 323 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 HMGCS1Q01581 520 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 RCAN2Q14206 197 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 NR6A1Q15406 480 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 ZDHHC20Q5W0Z9 365 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 LIPIQ6XZB0 460 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 TECPR1Q7Z6L1 1165 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 SLC15A3Q8IY34 581 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 PCYOX1LQ8NBM8 494 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 BPIFB1Q8TDL5 484 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 UBTD2Q8WUN7 234 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 FGF13Q92913 245 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 ROPN1LQ96C74 230 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 WRAP53Q9BUR4 548 aaKnown RBP14.17□□□□□ -0.14
VRK3-217ENST00000599538 RIC8BQ9NVN3 520 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 SMOXQ9NWM0 555 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 CMTM6Q9NX76 183 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 ZNHIT2Q9UHR6 403 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 LRCH1Q9Y2L9 728 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 LRRK1Q38SD2 2015 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 CASQ2O14958 399 aaPredicted RBP14.17□□□□□ -0.14
VRK3-217ENST00000599538 STK16O75716 305 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 SLC22A3O75751 556 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 ADH1CP00326 375 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 SRPRAP08240 638 aaKnown RBP14.17□□□□□ -0.14
VRK3-217ENST00000599538 SLC6A2P23975 617 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 CTSCP53634 463 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 AP5B1Q2VPB7 878 aa14.17□□□□□ -0.14
VRK3-217ENST00000599538 SGO1Q5FBB7 561 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms