RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ZNF501Q96CX3 271 aaPredicted RBP12.2□□□□□ -0.46
TRIM28-212ENST00000597995 VAT1Q99536 393 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 DESI2Q9BSY9 194 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 OSBPL8Q9BZF1 889 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 UGT1A7Q9HAW7 530 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 UGT1A10Q9HAW8 530 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 UGT1A8Q9HAW9 530 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 SYTL2Q9HCH5 934 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 IMP3Q9NV31 184 aaKnown RBP12.2□□□□□ -0.46
TRIM28-212ENST00000597995 ACSL5Q9ULC5 683 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 PACSIN2Q9UNF0 486 aaPredicted RBP12.2□□□□□ -0.46
TRIM28-212ENST00000597995 BTRCQ9Y297 605 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 SHANK1Q9Y566 2161 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 UNC79Q9P2D8 2635 aa12.2□□□□□ -0.46
TRIM28-212ENST00000597995 SEC16AO15027 2179 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 GLYATL1P3A0A0U1RQE8 302 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 CCDC66A2RUB6 948 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 H7C0C1 242 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 MEN1O00255 615 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 DPM1O60762 260 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 PTGIRP43119 386 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 ATP5OP48047 213 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 NAP1L1P55209 391 aaKnown RBP12.19□□□□□ -0.46
TRIM28-212ENST00000597995 RWDD2BP57060 319 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 CHAF1BQ13112 559 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 OLIG2Q13516 323 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 INPP5JQ15735 1006 aaPredicted RBP12.19□□□□□ -0.46
TRIM28-212ENST00000597995 SLC1A5Q15758 541 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 FAM151BQ6UXP7 276 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 SLC25A41Q8N5S1 370 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 SLC38A9Q8NBW4 561 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 IPMKQ8NFU5 416 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 CPT1BQ92523 772 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 CALR3Q96L12 384 aaKnown RBP12.19□□□□□ -0.46
TRIM28-212ENST00000597995 INSM2Q96T92 566 aaPredicted RBP12.19□□□□□ -0.46
TRIM28-212ENST00000597995 NLNQ9BYT8 704 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 CHST8Q9H2A9 424 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 KIR3DX1Q9H7L2 352 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 SLC24A2Q9UI40 661 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 TRHDEQ9UKU6 1024 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 G3BP2Q9UN86 482 aaKnown RBP12.19□□□□□ -0.46
TRIM28-212ENST00000597995 PKP3Q9Y446 797 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 COLEC10Q9Y6Z7 277 aa12.19□□□□□ -0.46
TRIM28-212ENST00000597995 MACROD2A1Z1Q3 448 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 OR6C74A6NCV1 312 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 OR2AG2A6NM03 316 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 MATN2O00339 956 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 GAPDHSO14556 408 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-212ENST00000597995 DDX3YO15523 660 aaKnown RBP12.18□□□□□ -0.46
TRIM28-212ENST00000597995 GPR39O43194 453 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 TMEM63AO94886 807 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 IPO7O95373 1038 aaKnown RBP12.18□□□□□ -0.46
TRIM28-212ENST00000597995 DDAH2O95865 285 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 AGTP01019 485 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 MSL3P1P0C860 447 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 HLA-DPA1P20036 260 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 MSH3P20585 1137 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 NDUFS1P28331 727 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 ADRA1AP35348 466 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 KPNA2P52292 529 aaKnown RBP12.18□□□□□ -0.46
TRIM28-212ENST00000597995 MPP3Q13368 585 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 MSLNQ13421 630 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-212ENST00000597995 PTPRCAPQ14761 206 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 GPR19Q15760 415 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 PLEKHS1Q5SXH7 462 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 FNBP1LQ5T0N5 605 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 HIST2H2BCQ6DN03 193 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 JMJD6Q6NYC1 403 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-212ENST00000597995 MED25Q71SY5 747 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 GLT6D1Q7Z4J2 308 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 KIAA1328Q86T90 577 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 DSELQ8IZU8 1212 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 TMEM102Q8N9M5 508 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-212ENST00000597995 GLIS1Q8NBF1 620 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 OR2L2Q8NH16 312 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 ZNF398Q8TD17 642 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 LINC00615Q96LM1 132 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-212ENST00000597995 C12orf66Q96MD2 445 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 WWP1Q9H0M0 922 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 GBA3Q9H227 469 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 FANCEQ9HB96 536 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 C1GALT1Q9NS00 363 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 IMPACTQ9P2X3 320 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 RSPH14Q9UHP6 348 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 TCFL5Q9UL49 500 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 SNX7Q9UNH6 387 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 CFAP20Q9Y6A4 193 aaKnown RBP12.18□□□□□ -0.46
TRIM28-212ENST00000597995 NBPF19A0A087WUL8 3843 aa12.18□□□□□ -0.46
TRIM28-212ENST00000597995 SPTBP11277 2137 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 PRRC2CQ9Y520 2896 aaKnown RBP12.17□□□□□ -0.46
TRIM28-212ENST00000597995 BUD23O43709 281 aaKnown RBP12.17□□□□□ -0.46
TRIM28-212ENST00000597995 SEMA7AO75326 666 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 FTCDO95954 541 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 RBP3P10745 1247 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 PSMB4P28070 264 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 RORAP35398 523 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 RRADP55042 308 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 EIF3EP60228 445 aaKnown RBP12.17□□□□□ -0.46
TRIM28-212ENST00000597995 PRKAA1Q13131 559 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 BCL7AQ4VC05 210 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms