RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 RMDN2Q96LZ7 410 aa10.84□□□□□ -0.67
LIG1-211ENST00000596457 NUDT22Q9BRQ3 303 aa10.84□□□□□ -0.67
LIG1-211ENST00000596457 LRRC1Q9BTT6 524 aa10.84□□□□□ -0.67
LIG1-211ENST00000596457 RAB17Q9H0T7 212 aa10.84□□□□□ -0.67
LIG1-211ENST00000596457 SEMA6CQ9H3T2 930 aa10.84□□□□□ -0.67
LIG1-211ENST00000596457 POT1Q9NUX5 634 aa10.84□□□□□ -0.67
LIG1-211ENST00000596457 TMEM9Q9P0T7 183 aa10.84□□□□□ -0.67
LIG1-211ENST00000596457 ZC3H7BQ9UGR2 993 aaKnown RBP10.84□□□□□ -0.67
LIG1-211ENST00000596457 GNPTGQ9UJJ9 305 aa10.84□□□□□ -0.67
LIG1-211ENST00000596457 MRFAP1Q9Y605 127 aa10.84□□□□□ -0.67
LIG1-211ENST00000596457 FAM169AQ9Y6X4 670 aa10.84□□□□□ -0.67
LIG1-211ENST00000596457 KNTC1P50748 2209 aa10.84□□□□□ -0.67
LIG1-211ENST00000596457 IGSF10Q6WRI0 2623 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 GOLGA4Q13439 2230 aaKnown RBP10.83□□□□□ -0.68
LIG1-211ENST00000596457 CTAGE15A4D2H0 777 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 NDC80O14777 642 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 LIN7AO14910 233 aaPredicted RBP10.83□□□□□ -0.68
LIG1-211ENST00000596457 DUX1O43812 170 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 UBXN7O94888 489 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 CPNE6O95741 557 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 MPOP05164 745 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 CTAGE8P0CG41 777 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 MTHFD1P11586 935 aaKnown RBP10.83□□□□□ -0.68
LIG1-211ENST00000596457 OGNP20774 298 aaKnown RBP10.83□□□□□ -0.68
LIG1-211ENST00000596457 CCR7P32248 378 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 CARSP49589 748 aaKnown RBP10.83□□□□□ -0.68
LIG1-211ENST00000596457 PLTPP55058 493 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 GPLD1P80108 840 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 CFHR1Q03591 330 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 HSPA14Q0VDF9 509 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 CAMK2BQ13554 666 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 CRYMQ14894 314 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 NR1D2Q14995 579 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 TRADDQ15628 312 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 HSP90AA5PQ58FG0 334 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 ZNF789Q5FWF6 425 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 SPANXN3Q5MJ09 141 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 ARMC3Q5W041 872 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 DUPD1Q68J44 220 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 CAPRIN2Q6IMN6 1127 aaKnown RBP10.83□□□□□ -0.68
LIG1-211ENST00000596457 XKR5Q6UX68 686 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 CTAGE6Q86UF2 777 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 CCDC25Q86WR0 208 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 CTAGE4Q8IX94 777 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 RCBTB1Q8NDN9 531 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 FBXO36Q8NEA4 188 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 MNS1Q8NEH6 495 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 CFAP61Q8NHU2 1237 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 CALML6Q8TD86 181 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 TMEM159Q96B96 161 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 TMEM74Q96NL1 305 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 CARD6Q9BX69 1037 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 STRADBQ9C0K7 418 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 P2RY12Q9H244 342 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 SLC40A1Q9NP59 571 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 SAYSD1Q9NPB0 183 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 WHRNQ9P202 907 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 SATB2Q9UPW6 733 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 COLEC10Q9Y6Z7 277 aa10.83□□□□□ -0.68
LIG1-211ENST00000596457 DMXL2Q8TDJ6 3036 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 ESYT3A0FGR9 886 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 E5RI56 91 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 NIPSNAP2O75323 286 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 TTC4O95801 387 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 S1PR4O95977 384 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 APOA4P06727 396 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 GSTM1P09488 218 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 HGFP14210 728 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 CHRM3P20309 590 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 RPS3P23396 243 aaKnown RBP eCLIP10.82□□□□□ -0.68
LIG1-211ENST00000596457 CSF2RBP32927 897 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 SLC1A2P43004 574 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 PDX1P52945 283 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 GABREP78334 506 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 MPP1Q00013 466 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 GUCY2DQ02846 1103 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 GSTM4Q03013 218 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 ABRQ12979 859 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 PRKG2Q13237 762 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 TUBB2AQ13885 445 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 FASTKD3Q14CZ7 662 aaKnown RBP10.82□□□□□ -0.68
LIG1-211ENST00000596457 TMED2Q15363 201 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 CTSL3PQ5NE16 218 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 RNF187Q5TA31 235 aaPredicted RBP10.82□□□□□ -0.68
LIG1-211ENST00000596457 TMEM71Q6P5X7 295 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 UNC5AQ6ZN44 842 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 ZNF574Q6ZN55 896 aaPredicted RBP10.82□□□□□ -0.68
LIG1-211ENST00000596457 CENPUQ71F23 418 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 LRRC6Q86X45 466 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 CILP2Q8IUL8 1156 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 PALM2Q8IXS6 379 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 RBM12BQ8IXT5 1001 aaKnown RBP10.82□□□□□ -0.68
LIG1-211ENST00000596457 ZBED8Q8IZ13 594 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 FBXO39Q8N4B4 442 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 GSDMBQ8TAX9 411 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 SKA2Q8WVK7 121 aaPredicted RBP10.82□□□□□ -0.68
LIG1-211ENST00000596457 LPGAT1Q92604 370 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 TFGQ92734 400 aaPredicted RBP10.82□□□□□ -0.68
LIG1-211ENST00000596457 NXPE2Q96DL1 559 aa10.82□□□□□ -0.68
LIG1-211ENST00000596457 CCDC74BQ96LY2 380 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms