RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 MRGPRGQ86SM5 289 aa13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 DNAJB14Q8TBM8 379 aa13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 CCHCR1Q8TD31 782 aa13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 GLYATL1Q969I3 302 aa13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 RELTQ969Z4 430 aa13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 FAF2Q96CS3 445 aa13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 LYSMD1Q96S90 227 aa13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 CD180Q99467 661 aa13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 POLR1EQ9GZS1 481 aaKnown RBP13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 PCDH9Q9HC56 1237 aa13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 P4HTMQ9NXG6 502 aa13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 DNPEPQ9ULA0 475 aa13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 INTUQ9ULD6 942 aa13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 TTLL3Q9Y4R7 772 aa13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 CFAP20Q9Y6A4 193 aaKnown RBP13.37□□□□□ -0.27
SHKBP1-208ENST00000595726 SLC9B1P1A6NJY1 282 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 PEX12O00623 359 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 ALOX12BO75342 701 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 JRKO75564 520 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 IPO13O94829 963 aaKnown RBP13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 PIRTP0C851 137 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 BPIP17213 487 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 CYP2A7P20853 494 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 ARHGAP25P42331 645 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 HALP42357 657 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 PDK2Q15119 407 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 ZNF630Q2M218 657 aaPredicted RBP13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 VWA2Q5GFL6 755 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 RAVER1Q8IY67 606 aaKnown RBP13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 MMP21Q8N119 569 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 KCTD6Q8NC69 237 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 ARRDC2Q8TBH0 407 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 LRRN4Q8WUT4 740 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 TMPRSS11EQ9UL52 423 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 SHOC2Q9UQ13 582 aa13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 PTRH2Q9Y3E5 179 aaKnown RBP13.36□□□□□ -0.27
SHKBP1-208ENST00000595726 FER1L5A0AVI2 2057 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 RGSL1A5PLK6 1076 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 GPR89AB7ZAQ6 455 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 TMEM150CB9EJG8 249 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 SLC4A1P02730 911 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 GPR89BP0CG08 455 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 GALNT3Q14435 633 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 SSPNQ14714 243 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 PAFAH1B3Q15102 231 aaKnown RBP13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 TCEAL1Q15170 157 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 BNC2Q6ZN30 1099 aaPredicted RBP13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 FAM83HQ6ZRV2 1179 aaPredicted RBP13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 TRAPPC5Q8IUR0 188 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 MAP7D3Q8IWC1 876 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 CCDC120Q96HB5 630 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 CNDP1Q96KN2 507 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 GBP5Q96PP8 586 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 SLX1AQ9BQ83 275 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 SLC7A5P2Q9GIP4 190 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 CHST11Q9NPF2 352 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 IMP3Q9NV31 184 aaKnown RBP13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 BTRCQ9Y297 605 aa13.35□□□□□ -0.27
SHKBP1-208ENST00000595726 ANKRD66B4E2M5 251 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 C9J4A7 227 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 ZNF749O43361 778 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 VEGFDO43915 354 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 NADKO95544 446 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 CBSLP0DN79 551 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 POLR2CP19387 275 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 KDELR1P24390 212 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 CBSP35520 551 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 TSFMP43897 325 aaKnown RBP13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 PREPP48147 710 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 SOX8P57073 446 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 SRSF11Q05519 484 aaKnown RBP13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 GALNT2Q10471 571 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 ZNF169Q14929 603 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 SLC9A5Q14940 896 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 ZFYVE27Q5T4F4 411 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 C1orf189Q5VU69 101 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 ZNF385CQ66K41 422 aaPredicted RBP13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 PPP1R32Q7Z5V6 425 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 CDH24Q86UP0 819 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 LRRC49Q8IUZ0 686 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 CCDC170Q8IYT3 715 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 PQLC3Q8N755 202 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 CATSPER1Q8NEC5 780 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 PPP4R1Q8TF05 950 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 RAPGEF5Q92565 580 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 IP6K3Q96PC2 410 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 PANX2Q96RD6 677 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 ZSCAN5AQ9BUG6 496 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 KLHL25Q9H0H3 589 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 ATP13A2Q9NQ11 1180 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 RBM22Q9NW64 420 aaKnown RBP eCLIP13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 PADI2Q9Y2J8 665 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 CCDC88CQ9P219 2028 aa13.34□□□□□ -0.27
SHKBP1-208ENST00000595726 TRGV8A0A0C4DH27 118 aa13.33□□□□□ -0.28
SHKBP1-208ENST00000595726 LRRD1A4D1F6 860 aa13.33□□□□□ -0.28
SHKBP1-208ENST00000595726 C3orf70A6NLC5 250 aaPredicted RBP13.33□□□□□ -0.28
SHKBP1-208ENST00000595726 ZNF487B1APH4 448 aa13.33□□□□□ -0.28
SHKBP1-208ENST00000595726 C19orf84I3L1E1 186 aa13.33□□□□□ -0.28
SHKBP1-208ENST00000595726 KLHL41O60662 606 aa13.33□□□□□ -0.28
SHKBP1-208ENST00000595726 CNOT3O75175 753 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms