RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 LILRA3Q8N6C8 439 aaPredicted RBP23.28■■□□□ 1.32
LSM4-202ENST00000593564 SLC38A9Q8NBW4 561 aa23.28■■□□□ 1.32
LSM4-202ENST00000593564 ACTL9Q8TC94 416 aa23.28■■□□□ 1.32
LSM4-202ENST00000593564 PPM1MQ96MI6 270 aa23.28■■□□□ 1.32
LSM4-202ENST00000593564 TSPY26PQ9H489 355 aa23.28■■□□□ 1.32
LSM4-202ENST00000593564 EFR3BQ9Y2G0 817 aa23.28■■□□□ 1.32
LSM4-202ENST00000593564 PCDHA13Q9Y5I0 950 aa23.28■■□□□ 1.32
LSM4-202ENST00000593564 MATN2O00339 956 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 GP1BBP13224 206 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 POLR2CP19387 275 aaPredicted RBP23.27■■□□□ 1.32
LSM4-202ENST00000593564 PSMB4P28070 264 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 CTNNA1P35221 906 aaKnown RBP23.27■■□□□ 1.32
LSM4-202ENST00000593564 ZNF140P52738 457 aaPredicted RBP23.27■■□□□ 1.32
LSM4-202ENST00000593564 GSDMDP57764 484 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 OTUD4Q01804 1114 aaKnown RBP23.27■■□□□ 1.32
LSM4-202ENST00000593564 OLIG2Q13516 323 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 KRT33BQ14525 404 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 PRPSAP1Q14558 356 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 SKOR2Q2VWA4 1001 aaPredicted RBP23.27■■□□□ 1.32
LSM4-202ENST00000593564 ANKRD20A2Q5SQ80 823 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 ANKRD20A1Q5TYW2 823 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 ANKRD20A3Q5VUR7 823 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 CPZQ66K79 652 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 FBXO38Q6PIJ6 1188 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 CDKL3Q8IVW4 592 aaPredicted RBP23.27■■□□□ 1.32
LSM4-202ENST00000593564 NXPE1Q8N323 547 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 TC2NQ8N9U0 490 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 ACVR1CQ8NER5 493 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 OR4E2Q8NGC2 313 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 OR13C4Q8NGS5 318 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 HEXDCQ8WVB3 486 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 COPS8Q99627 209 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 CHST8Q9H2A9 424 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 FANCEQ9HB96 536 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 C1GALT1Q9NS00 363 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 TFR2Q9UP52 801 aa23.27■■□□□ 1.32
LSM4-202ENST00000593564 PCDHGA9Q9Y5G4 932 aaKnown RBP23.27■■□□□ 1.32
LSM4-202ENST00000593564 SPTAN1Q13813 2472 aaKnown RBP23.27■■□□□ 1.32
LSM4-202ENST00000593564 RP1L1Q8IWN7 2480 aaPredicted RBP23.27■■□□□ 1.32
LSM4-202ENST00000593564 C17orf113A0A1B0GUU1 675 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 CFAP99D6REC4 459 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 KLK3P07288 261 aaPredicted RBP23.26■■□□□ 1.31
LSM4-202ENST00000593564 ATP1B2P14415 290 aaPredicted RBP23.26■■□□□ 1.31
LSM4-202ENST00000593564 ITGALP20701 1170 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 PGDP52209 483 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 PLEKHS1Q5SXH7 462 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 SNX20Q7Z614 316 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 CCDC170Q8IYT3 715 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 DSELQ8IZU8 1212 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 RNF214Q8ND24 703 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 CPT1BQ92523 772 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 SLC25A23Q9BV35 468 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 TLR10Q9BXR5 811 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 ING2Q9H160 280 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 SYTL2Q9HCH5 934 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 MLXIPLQ9NP71 852 aa23.26■■□□□ 1.31
LSM4-202ENST00000593564 MACROD2A1Z1Q3 448 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 SLC9B1P1A6NJY1 282 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 MEN1O00255 615 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 PJA2O43164 708 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 STK10O94804 968 aaKnown RBP23.25■■□□□ 1.31
LSM4-202ENST00000593564 RAB40ALP0C0E4 278 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 CDH3P22223 829 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 PTPN7P35236 360 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 HADHAP40939 763 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 ABRQ12979 859 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 CHAF1BQ13112 559 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 SPA17Q15506 151 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 ADAMTS17Q8TE56 1095 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 LCN9Q8WX39 176 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 PPP1R2P1Q96PQ5 205 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 OSBPL8Q9BZF1 889 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 SRMSQ9H3Y6 488 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 ACSS2Q9NR19 701 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 FEZ2Q9UHY8 353 aaPredicted RBP23.25■■□□□ 1.31
LSM4-202ENST00000593564 PCDHA3Q9Y5H8 950 aa23.25■■□□□ 1.31
LSM4-202ENST00000593564 ARGFXA6NJG6 315 aa23.24■■□□□ 1.31
LSM4-202ENST00000593564 MSL3P1P0C860 447 aa23.24■■□□□ 1.31
LSM4-202ENST00000593564 RBP3P10745 1247 aa23.24■■□□□ 1.31
LSM4-202ENST00000593564 RORAP35398 523 aa23.24■■□□□ 1.31
LSM4-202ENST00000593564 EIF3EP60228 445 aaKnown RBP23.24■■□□□ 1.31
LSM4-202ENST00000593564 TMPRSS15P98073 1019 aa23.24■■□□□ 1.31
LSM4-202ENST00000593564 GPR33Q49SQ1 333 aa23.24■■□□□ 1.31
LSM4-202ENST00000593564 PRAMEF17Q5VTA0 474 aa23.24■■□□□ 1.31
LSM4-202ENST00000593564 PAPD7Q5XG87 772 aaKnown RBP23.24■■□□□ 1.31
LSM4-202ENST00000593564 DENND5AQ6IQ26 1287 aa23.24■■□□□ 1.31
LSM4-202ENST00000593564 SPATA13Q96N96 652 aa23.24■■□□□ 1.31
LSM4-202ENST00000593564 TBL1YQ9BQ87 522 aa23.24■■□□□ 1.31
LSM4-202ENST00000593564 OR52A5Q9H2C5 316 aa23.24■■□□□ 1.31
LSM4-202ENST00000593564 COG4Q9H9E3 785 aa23.24■■□□□ 1.31
LSM4-202ENST00000593564 ARNT2Q9HBZ2 717 aa23.24■■□□□ 1.31
LSM4-202ENST00000593564 LUC7LQ9NQ29 371 aaKnown RBP23.24■■□□□ 1.31
LSM4-202ENST00000593564 IGLV3-16A0A075B6K0 115 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 CCDC66A2RUB6 948 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 GSAPA4D1B5 854 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 TTLL8A6PVC2 850 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 KCNN4O15554 427 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 CTNNA2P26232 953 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 PRDX3P30048 256 aaKnown RBP23.23■■□□□ 1.31
LSM4-202ENST00000593564 ZNF658BQ4V348 819 aaPredicted RBP23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms