RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 GDPD4Q6W3E5 623 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 FAM47EQ6ZV65 393 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 TAS2R42Q7RTR8 314 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 CMC1Q7Z7K0 106 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 TMEM145Q8NBT3 493 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 OR13C4Q8NGS5 318 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 RDH11Q8TC12 318 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 LMX1AQ8TE12 382 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 FAM131CQ96AQ9 280 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 CCDC97Q96F63 343 aaPredicted RBP10.03□□□□□ -0.8
SS18-210ENST00000578700 SEC16BQ96JE7 1060 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 SCYL1Q96KG9 808 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 ELAC2Q9BQ52 826 aaKnown RBP10.03□□□□□ -0.8
SS18-210ENST00000578700 ARHGAP9Q9BRR9 750 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 TRPM6Q9BX84 2022 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 CAB39LQ9H9S4 337 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 FGFR1OP2Q9NVK5 253 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 IL17BQ9UHF5 180 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 ZFR2Q9UPR6 939 aaKnown RBP10.03□□□□□ -0.8
SS18-210ENST00000578700 U3KQA8 63 aa10.03□□□□□ -0.8
SS18-210ENST00000578700 COL27A1Q8IZC6 1860 aaPredicted RBP10.02□□□□□ -0.8
SS18-210ENST00000578700 TEX15Q9BXT5 2789 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 C1orf232A0A0U1RR37 186 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 H7C0S8 307 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 AGRPO00253 132 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 TRAFD1O14545 582 aaPredicted RBP10.02□□□□□ -0.81
SS18-210ENST00000578700 CASC3O15234 703 aaKnown RBP10.02□□□□□ -0.81
SS18-210ENST00000578700 PLIN3O60664 434 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 S1PR4O95977 384 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 PRKCGP05129 697 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 CTSLP07711 333 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 BPGMP07738 259 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 DHRS4L1P0CG22 281 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 CPA3P15088 417 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 CTPS1P17812 591 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 ITGALP20701 1170 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 MC4RP32245 332 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 HMGCLP35914 325 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 SLC26A3P40879 764 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 ETV4P43268 484 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 ARSDP51689 593 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 STC1P52823 247 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 PRKAA2P54646 552 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 CACNG1Q06432 222 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 CCDC15Q0P6D6 951 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 ARHGEF7Q14155 803 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 ITIH4Q14624 930 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 ARSIQ5FYB1 569 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 AGAP9Q5VTM2 703 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 LYPLAL1Q5VWZ2 237 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 NEK5Q6P3R8 708 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 CERS6Q6ZMG9 384 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 GCNT7Q6ZNI0 430 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 RBM44Q6ZP01 1051 aaKnown RBP10.02□□□□□ -0.81
SS18-210ENST00000578700 DPY19L3Q6ZPD9 716 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 SPATA21Q7Z572 469 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 SLC22A18ASQ8N1D0 253 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 ARL14Q8N4G2 192 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 TTC30BQ8N4P2 665 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 CHST14Q8NCH0 376 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 GRIN3AQ8TCU5 1115 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 PPP4R1Q8TF05 950 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 PIH1D2Q8WWB5 315 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 SCRN2Q96FV2 425 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 BMFQ96LC9 184 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 MCMBPQ9BTE3 642 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 TSSK1BQ9BXA7 367 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 SUDS3Q9H7L9 328 aaPredicted RBP10.02□□□□□ -0.81
SS18-210ENST00000578700 NMRAL1Q9HBL8 299 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 POPDC3Q9HBV1 291 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 GPAMQ9HCL2 828 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 RAD18Q9NS91 495 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 KLHL14Q9P2G3 628 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 VWA7Q9Y334 891 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 ENTPD2Q9Y5L3 495 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 COMMD10Q9Y6G5 202 aa10.02□□□□□ -0.81
SS18-210ENST00000578700 UBA6A0AVT1 1052 aaPredicted RBP10.01□□□□□ -0.81
SS18-210ENST00000578700 POM121BA6NF01 834 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 OR51F1A6NGY5 319 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 H3BM21 787 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 CCL22O00626 93 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 PHGDHO43175 533 aaKnown RBP10.01□□□□□ -0.81
SS18-210ENST00000578700 EDF1O60869 148 aaKnown RBP10.01□□□□□ -0.81
SS18-210ENST00000578700 VPS26AO75436 327 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 SRP72O76094 671 aaKnown RBP10.01□□□□□ -0.81
SS18-210ENST00000578700 UGT2B4P06133 528 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 PYGLP06737 847 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 ALPIP09923 528 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 MYL2P10916 166 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 JUNDP17535 347 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 GRK2P25098 689 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 PSMA3P25788 255 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 GABRB3P28472 473 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 FOXN2P32314 431 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 CSRP3P50461 194 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 STX3Q13277 289 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 CLN3Q13286 438 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 PDAP1Q13442 181 aaKnown RBP10.01□□□□□ -0.81
SS18-210ENST00000578700 C1orf61Q13536 156 aa10.01□□□□□ -0.81
SS18-210ENST00000578700 NR0B2Q15466 257 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms