RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 CRIP2P52943 208 aaPredicted RBP4.89□□□□□ -1.63
NUP88-213ENST00000576862 PNLIPRP2P54317 469 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 PSMC6P62333 389 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 FAM98BQ52LJ0 330 aaKnown RBP4.89□□□□□ -1.63
NUP88-213ENST00000576862 ALS2CLQ60I27 953 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 SLC35E4Q6ICL7 350 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 OR10V1Q8NGI7 309 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 PRMT6Q96LA8 375 aaPredicted RBP4.89□□□□□ -1.63
NUP88-213ENST00000576862 MAK16Q9BXY0 300 aaKnown RBP4.89□□□□□ -1.63
NUP88-213ENST00000576862 PELI2Q9HAT8 420 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 ZBTB20Q9HC78 741 aaPredicted RBP4.89□□□□□ -1.63
NUP88-213ENST00000576862 SLC38A7Q9NVC3 462 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 MIOSQ9NXC5 875 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 TAS2R14Q9NYV8 317 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 PTTG2Q9NZH5 202 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 GPR34Q9UPC5 381 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 JRKLQ9Y4A0 524 aa4.89□□□□□ -1.63
NUP88-213ENST00000576862 TROQ12816 1431 aaPredicted RBP4.89□□□□□ -1.63
NUP88-213ENST00000576862 hCG_1807616A0A1W2PRN6 198 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 TO15178 435 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 GPR137BO60478 399 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 CREG1O75629 220 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 CSH1P0DML2 217 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 CSH2P0DML3 217 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 ALOX12P18054 663 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 ACSL1P33121 698 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 THOP1P52888 689 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 TMF1P82094 1093 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 ZC2HC1CQ53FD0 456 aaPredicted RBP4.88□□□□□ -1.63
NUP88-213ENST00000576862 DENND5BQ6ZUT9 1274 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 INTS8Q75QN2 995 aaKnown RBP4.88□□□□□ -1.63
NUP88-213ENST00000576862 CRYBG2Q8N1P7 616 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 C17orf53Q8N3J3 647 aaPredicted RBP4.88□□□□□ -1.63
NUP88-213ENST00000576862 STPG4Q8N801 248 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 L3MBTL4Q8NA19 623 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 TM9SF4Q92544 642 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 SECISBP2LQ93073 1101 aaKnown RBP4.88□□□□□ -1.63
NUP88-213ENST00000576862 ERLEC1Q96DZ1 483 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 FBXO17Q96EF6 278 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 ZNF696Q9H7X3 374 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 ZNF624Q9P2J8 865 aaPredicted RBP4.88□□□□□ -1.63
NUP88-213ENST00000576862 KIAA1210Q9ULL0 1709 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 DHX57Q6P158 1386 aaKnown RBP4.88□□□□□ -1.63
NUP88-213ENST00000576862 RAB3GAP2Q9H2M9 1393 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 ATP10BO94823 1461 aa4.88□□□□□ -1.63
NUP88-213ENST00000576862 CLASP1Q7Z460 1538 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 ABCA8O94911 1581 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 ERCC6L2Q5T890 1561 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 SMIM1B2RUZ4 78 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 CIDEAO60543 219 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 LDLRP01130 860 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 NR3C1P04150 777 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 INHBAP08476 426 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 PORP16435 677 aaPredicted RBP4.87□□□□□ -1.63
NUP88-213ENST00000576862 KRTAP10-6P60371 365 aaPredicted RBP4.87□□□□□ -1.63
NUP88-213ENST00000576862 SNRPEP62304 92 aaKnown RBP4.87□□□□□ -1.63
NUP88-213ENST00000576862 MFAP5Q13361 173 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 MELKQ14680 651 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 ASPRV1Q53RT3 343 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 OTUD3Q5T2D3 398 aaPredicted RBP4.87□□□□□ -1.63
NUP88-213ENST00000576862 GCNT6Q5T4J0 391 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 SFMBT2Q5VUG0 894 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 ARHGAP17Q68EM7 881 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 KLC3Q6P597 504 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 GSG1LQ6UXU4 331 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 CEACAM20Q6UY09 585 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 FASTKD5Q7L8L6 764 aaKnown RBP4.87□□□□□ -1.63
NUP88-213ENST00000576862 TRPT1Q86TN4 253 aaKnown RBP4.87□□□□□ -1.63
NUP88-213ENST00000576862 KBTBD6Q86V97 674 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 POC5Q8NA72 575 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 TRIM58Q8NG06 486 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 SENP5Q96HI0 755 aaPredicted RBP4.87□□□□□ -1.63
NUP88-213ENST00000576862 PAFAH2Q99487 392 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 PSD2Q9BQI7 771 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 RTN4RQ9BZR6 473 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 ARHGEF38Q9NXL2 777 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 NPAP1Q9NZP6 1156 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 LARSQ9P2J5 1176 aaKnown RBP4.87□□□□□ -1.63
NUP88-213ENST00000576862 ZNF644Q9H582 1327 aaPredicted RBP4.87□□□□□ -1.63
NUP88-213ENST00000576862 UACAQ9BZF9 1416 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 SETD5Q9C0A6 1442 aa4.87□□□□□ -1.63
NUP88-213ENST00000576862 TCOF1Q13428 1488 aaKnown RBP4.87□□□□□ -1.63
NUP88-213ENST00000576862 SHROOM2Q13796 1616 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 RAPGEF6Q8TEU7 1601 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 PRSS51A0A1B0GVH4 220 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 ADAMDEC1O15204 470 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 SLC22A2O15244 555 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 GFPT2O94808 682 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 PATE4P0C8F1 98 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 ACP2P11117 423 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 CKMT2P17540 419 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 TRIM21P19474 475 aaKnown RBP4.86□□□□□ -1.63
NUP88-213ENST00000576862 NRIP1P48552 1158 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 CLNS1AP54105 237 aaKnown RBP4.86□□□□□ -1.63
NUP88-213ENST00000576862 TUBB4BP68371 445 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 PNRC1Q12796 327 aaPredicted RBP4.86□□□□□ -1.63
NUP88-213ENST00000576862 EPS8Q12929 822 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 CHAF1BQ13112 559 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 CUL4AQ13619 759 aa4.86□□□□□ -1.63
NUP88-213ENST00000576862 PCLAFQ15004 111 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms