RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 IFRD1O00458 451 aaPredicted RBP9.91□□□□□ -0.82
VPS53-220ENST00000576149 VILLO15195 856 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 CKMP06732 381 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 UMPSP11172 480 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 FCGR1AP12314 374 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 ETS2P15036 469 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 NCK1P16333 377 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 LAG3P18627 525 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 HTR1EP28566 365 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 SERPINA4P29622 427 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 HMOX2P30519 316 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 CCT8P50990 548 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 PTPN5P54829 565 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 ADRM1Q16186 407 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 PHKG1Q16816 387 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 PLEKHG6Q3KR16 790 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 TRIM60Q495X7 471 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 AASDHQ4L235 1098 aaPredicted RBP9.91□□□□□ -0.82
VPS53-220ENST00000576149 RFTN2Q52LD8 501 aaPredicted RBP9.91□□□□□ -0.82
VPS53-220ENST00000576149 SULT1C3Q6IMI6 304 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 DLEU7Q6UYE1 221 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 RNF165Q6ZSG1 346 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 TPGS1Q6ZTW0 290 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 TSPAN33Q86UF1 283 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 NXPE1Q8N323 547 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 CBR4Q8N4T8 237 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 FIBCD1Q8N539 461 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 OR2AP1Q8NGE2 309 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 MRPS31Q92665 395 aaKnown RBP9.91□□□□□ -0.82
VPS53-220ENST00000576149 LRRC3Q9BY71 257 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 CD244Q9BZW8 370 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 GRIP2Q9C0E4 1043 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 ZMYM5Q9UJ78 669 aa9.91□□□□□ -0.82
VPS53-220ENST00000576149 FAM149AA5PLN7 773 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 NPIPB15A6NHN6 443 aaPredicted RBP9.9□□□□□ -0.82
VPS53-220ENST00000576149 A8MX80 341 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 DLGAP1O14490 977 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 TPST1O60507 370 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 LILRB3O75022 631 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 H6PDO95479 791 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 JAK1P23458 1154 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 NR1H2P55055 460 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 HABP4Q5JVS0 413 aaKnown RBP9.9□□□□□ -0.82
VPS53-220ENST00000576149 METTL2BQ6P1Q9 378 aaKnown RBP9.9□□□□□ -0.82
VPS53-220ENST00000576149 RBM44Q6ZP01 1051 aaKnown RBP9.9□□□□□ -0.82
VPS53-220ENST00000576149 PROSER1Q86XN7 944 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 TMC8Q8IU68 726 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 GPR26Q8NDV2 337 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 DIS3LQ8TF46 1054 aaKnown RBP9.9□□□□□ -0.82
VPS53-220ENST00000576149 UBTD2Q8WUN7 234 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 RHBDF1Q96CC6 855 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 PPP3R2Q96LZ3 170 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 EGFL8Q99944 293 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 APOL5Q9BWW9 433 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 RBM38Q9H0Z9 239 aaKnown RBP9.9□□□□□ -0.82
VPS53-220ENST00000576149 RDH14Q9HBH5 336 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 LATS2Q9NRM7 1088 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.9□□□□□ -0.82
VPS53-220ENST00000576149 PNPLA3Q9NST1 481 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 OLAHQ9NV23 265 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 OPTCQ9UBM4 332 aa9.9□□□□□ -0.82
VPS53-220ENST00000576149 POLR3HQ9Y535 204 aaPredicted RBP9.9□□□□□ -0.82
VPS53-220ENST00000576149 OBSL1O75147 1896 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 KIAA1671Q9BY89 1806 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 A0A1B0GTW7 788 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 H3BNH8 94 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 PDLIM1O00151 329 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 PLOD2O00469 737 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 RSL1D1O76021 490 aaKnown RBP9.9□□□□□ -0.83
VPS53-220ENST00000576149 SRCP12931 536 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 HRH2P25021 359 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 RFC2P35250 354 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 GDF5P43026 501 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 PLOD1Q02809 727 aaPredicted RBP9.9□□□□□ -0.83
VPS53-220ENST00000576149 LSAMPQ13449 338 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 KIAA0040Q15053 153 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 ATP6AP1Q15904 470 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 CRY1Q16526 586 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 MYLK3Q32MK0 819 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 KRT80Q6KB66 452 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 CRTC1Q6UUV9 634 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 SPRED1Q7Z699 444 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 TSPAN14Q8NG11 270 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 SCRN2Q96FV2 425 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 LMLNQ96KR4 655 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 RPL10LQ96L21 214 aaKnown RBP9.9□□□□□ -0.83
VPS53-220ENST00000576149 C9orf16Q9BUW7 83 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 RPF2Q9H7B2 306 aaKnown RBP9.9□□□□□ -0.83
VPS53-220ENST00000576149 VCX3AQ9NNX9 186 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 C8orf4Q9NR00 106 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 WWOXQ9NZC7 414 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 ANAPC2Q9UJX6 822 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 TBX21Q9UL17 535 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 USP22Q9UPT9 525 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 MYRFQ9Y2G1 1151 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 ANGPTL3Q9Y5C1 460 aa9.9□□□□□ -0.83
VPS53-220ENST00000576149 ZNF106Q9H2Y7 1883 aaKnown RBP9.89□□□□□ -0.83
VPS53-220ENST00000576149 SCN8AQ9UQD0 1980 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 CXorf51AA0A1B0GTR3 108 aa9.89□□□□□ -0.83
VPS53-220ENST00000576149 ABHD14A-ACY1A0A1B0GW23 586 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms