RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 CPT1BQ92523 772 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 CCM2Q9BSQ5 444 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 LRRC4CQ9HCJ2 640 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 C1GALT1Q9NS00 363 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 FKBPLQ9UIM3 349 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 HEBP2Q9Y5Z4 205 aa20.5■□□□□ 0.87
VPS53-216ENST00000574029 SLC9B1P1A6NJY1 282 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 MEN1O00255 615 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 MATN2O00339 956 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 SORBS2O94875 1100 aaKnown RBP20.49■□□□□ 0.87
VPS53-216ENST00000574029 GNLYP22749 145 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 RBL1P28749 1068 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 RORAP35398 523 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 PRLHRP49683 370 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 ABRQ12979 859 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 PRKAA1Q13131 559 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 MSLNQ13421 630 aaPredicted RBP20.49■□□□□ 0.87
VPS53-216ENST00000574029 GSE1Q14687 1217 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 BBS12Q6ZW61 710 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 DAAM2Q86T65 1068 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 CCDC50Q8IVM0 306 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 LILRA3Q8N6C8 439 aaPredicted RBP20.49■□□□□ 0.87
VPS53-216ENST00000574029 ACVR1CQ8NER5 493 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 HM13Q8TCT9 377 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 RBM41Q96IZ5 413 aaKnown RBP20.49■□□□□ 0.87
VPS53-216ENST00000574029 TLR10Q9BXR5 811 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 NLNQ9BYT8 704 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 C10orf88Q9H8K7 445 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 FANCEQ9HB96 536 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 SYTL2Q9HCH5 934 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 MAP4K5Q9Y4K4 846 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 PCDHGB7Q9Y5F8 929 aa20.49■□□□□ 0.87
VPS53-216ENST00000574029 APOC4-APOC2K7ER74 178 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 APOC2P02655 101 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 MSL3P1P0C860 447 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 RALBP11234 206 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 CDH3P22223 829 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 KRT33BQ14525 404 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 ZNF789Q5FWF6 425 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 ITPRIPL1Q6GPH6 555 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 CNGA4Q8IV77 575 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 ENDOVQ8N8Q3 282 aaKnown RBP20.48■□□□□ 0.87
VPS53-216ENST00000574029 ULK4Q96C45 1275 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 DCUN1D1Q96GG9 259 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 C19orf43Q9BQ61 176 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 TCFL5Q9UL49 500 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 SNX7Q9UNH6 387 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 MED13Q9UHV7 2174 aa20.48■□□□□ 0.87
VPS53-216ENST00000574029 C17orf113A0A1B0GUU1 675 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 H7C0C1 242 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 TMEM63AO94886 807 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 LCA5LO95447 670 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 CAPN1P07384 714 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 ATP5OP48047 213 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 OLIG2Q13516 323 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 FHL5Q5TD97 284 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 SARM1Q6SZW1 724 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 NXPE1Q8N323 547 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 OR13C4Q8NGS5 318 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 OR1L3Q8NH93 324 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 HEXDCQ8WVB3 486 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 CLIP3Q96DZ5 547 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 APOL2Q9BQE5 337 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 HEMGNQ9BXL5 484 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 SRMSQ9H3Y6 488 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 PCMTD2Q9NV79 361 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 CRLS1Q9UJA2 301 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 AAR2Q9Y312 384 aaKnown RBP20.47■□□□□ 0.87
VPS53-216ENST00000574029 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.47■□□□□ 0.87
VPS53-216ENST00000574029 ZNF451Q9Y4E5 1061 aa20.47■□□□□ 0.87
VPS53-216ENST00000574029 USP9YO00507 2555 aaPredicted RBP20.46■□□□□ 0.87
VPS53-216ENST00000574029 DDX3YO15523 660 aaKnown RBP20.46■□□□□ 0.87
VPS53-216ENST00000574029 CRTAMO95727 393 aa20.46■□□□□ 0.87
VPS53-216ENST00000574029 PRDX3P30048 256 aaKnown RBP20.46■□□□□ 0.87
VPS53-216ENST00000574029 MAGEA1P43355 309 aa20.46■□□□□ 0.87
VPS53-216ENST00000574029 ZNF658BQ4V348 819 aaPredicted RBP20.46■□□□□ 0.87
VPS53-216ENST00000574029 C11orf63Q6NUN7 778 aa20.46■□□□□ 0.87
VPS53-216ENST00000574029 FAM198BQ6UWH4 519 aa20.46■□□□□ 0.87
VPS53-216ENST00000574029 LCN9Q8WX39 176 aa20.46■□□□□ 0.87
VPS53-216ENST00000574029 KRT35Q92764 455 aa20.46■□□□□ 0.87
VPS53-216ENST00000574029 FERD3LQ96RJ6 166 aa20.46■□□□□ 0.87
VPS53-216ENST00000574029 PITPNM3Q9BZ71 974 aa20.46■□□□□ 0.87
VPS53-216ENST00000574029 OR52A5Q9H2C5 316 aa20.46■□□□□ 0.87
VPS53-216ENST00000574029 TFB2MQ9H5Q4 396 aaKnown RBP20.46■□□□□ 0.87
VPS53-216ENST00000574029 ACTR5Q9H9F9 607 aaPredicted RBP20.46■□□□□ 0.87
VPS53-216ENST00000574029 SHANK1Q9Y566 2161 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 GSAPA4D1B5 854 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 TMEM150CB9EJG8 249 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 AKR1B15C9JRZ8 316 aaPredicted RBP20.45■□□□□ 0.86
VPS53-216ENST00000574029 BTN3A3O00478 584 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 ATP1B2P14415 290 aaPredicted RBP20.45■□□□□ 0.86
VPS53-216ENST00000574029 ST6GAL1P15907 406 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 PSMB4P28070 264 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 PREPP48147 710 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 VAV2P52735 878 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 ZNF140P52738 457 aaPredicted RBP20.45■□□□□ 0.86
VPS53-216ENST00000574029 ITGA1P56199 1179 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 TBX2Q13207 712 aaPredicted RBP20.45■□□□□ 0.86
VPS53-216ENST00000574029 C4orf17Q53FE4 359 aa20.45■□□□□ 0.86
VPS53-216ENST00000574029 ANKRD20A2Q5SQ80 823 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms