RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 OR2L2Q8NH16 312 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 GDAP1Q8TB36 358 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 ZNF398Q8TD17 642 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 LINC00615Q96LM1 132 aaPredicted RBP6.55□□□□□ -1.36
VPS53-213ENST00000572334 CCDC42Q96M95 316 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 FCRL4Q96PJ5 515 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 VAT1Q99536 393 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 FICDQ9BVA6 458 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 TWSG1Q9GZX9 223 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 KIR3DX1Q9H7L2 352 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 FGF21Q9NSA1 209 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 HRASLS2Q9NWW9 162 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 FAM53CQ9NYF3 392 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.55□□□□□ -1.36
VPS53-213ENST00000572334 HACD3Q9P035 362 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 KLHL8Q9P2G9 620 aaPredicted RBP6.55□□□□□ -1.36
VPS53-213ENST00000572334 SLC24A2Q9UI40 661 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 FKBPLQ9UIM3 349 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 KCND3Q9UK17 655 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 RARRES3Q9UL19 164 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 BTRCQ9Y297 605 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 CSMD1Q96PZ7 3565 aa6.55□□□□□ -1.36
VPS53-213ENST00000572334 IGLV3-16A0A075B6K0 115 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 PIPSLA2A3N6 862 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 MGAT4DA6NG13 374 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 HACD1B0YJ81 288 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 H3BMH7 237 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 MKRN2OSH3BPM6 223 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 APOC4-APOC2K7ER74 178 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 CCL22O00626 93 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 DDX3YO15523 660 aaKnown RBP6.54□□□□□ -1.36
VPS53-213ENST00000572334 HCRTR1O43613 425 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 LDB2O43679 373 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 SPOPO43791 374 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 RFPL1O75677 317 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 CEACAM4O75871 244 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 SRP72O76094 671 aaKnown RBP6.54□□□□□ -1.36
VPS53-213ENST00000572334 SORBS2O94875 1100 aaKnown RBP6.54□□□□□ -1.36
VPS53-213ENST00000572334 ZRANB2O95218 330 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS53-213ENST00000572334 PRAMEF1O95521 474 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 ZBTB11O95625 1053 aaPredicted RBP6.54□□□□□ -1.36
VPS53-213ENST00000572334 APOC2P02655 101 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 MT-ND3P03897 115 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 CCNYL3P0C7X3 344 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 PRSS56P0CW18 603 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 VCLP18206 1134 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 LPOP22079 712 aaPredicted RBP6.54□□□□□ -1.36
VPS53-213ENST00000572334 PSMB4P28070 264 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 PTPN4P29074 926 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 HALP42357 657 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 PRLHRP49683 370 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 CDKN1CP49918 316 aaPredicted RBP6.54□□□□□ -1.36
VPS53-213ENST00000572334 ZNF140P52738 457 aaPredicted RBP6.54□□□□□ -1.36
VPS53-213ENST00000572334 HSD11B2P80365 405 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 ACY1Q03154 408 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 XRCC4Q13426 336 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 ITGA9Q13797 1035 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 TUBB2AQ13885 445 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 GTF2H3Q13889 308 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 SEPT6Q14141 434 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 TAF1AQ15573 450 aaPredicted RBP6.54□□□□□ -1.36
VPS53-213ENST00000572334 IZUMO3Q5VZ72 239 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 PAPD7Q5XG87 772 aaKnown RBP6.54□□□□□ -1.36
VPS53-213ENST00000572334 ZNF385CQ66K41 422 aaPredicted RBP6.54□□□□□ -1.36
VPS53-213ENST00000572334 HIST2H2BCQ6DN03 193 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 CCDC70Q6NSX1 233 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 AADACL2Q6P093 401 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 ASB18Q6ZVZ8 466 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 BZW1Q7L1Q6 419 aaKnown RBP6.54□□□□□ -1.36
VPS53-213ENST00000572334 KMT5CQ86Y97 462 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 SPNS2Q8IVW8 549 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 TMEM151BQ8IW70 566 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 DSELQ8IZU8 1212 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 Q8NA96 180 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 OR13C4Q8NGS5 318 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 ZFPM2Q8WW38 1151 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 P3H4Q92791 437 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 C12orf66Q96MD2 445 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 LRFN5Q96NI6 719 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 CD180Q99467 661 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 APOL2Q9BQE5 337 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 TUBB2BQ9BVA1 445 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 HEMGNQ9BXL5 484 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 GPR87Q9BY21 358 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 GBA3Q9H227 469 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 CHST8Q9H2A9 424 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 OR52A5Q9H2C5 316 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 FAM96AQ9H5X1 160 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 ASB8Q9H765 288 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 PDE7BQ9NP56 450 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 LATS2Q9NRM7 1088 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 IMP3Q9NV31 184 aaKnown RBP6.54□□□□□ -1.36
VPS53-213ENST00000572334 ZNHIT6Q9NWK9 470 aaKnown RBP6.54□□□□□ -1.36
VPS53-213ENST00000572334 RSPH14Q9UHP6 348 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 TRHDEQ9UKU6 1024 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 POMT2Q9UKY4 750 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 ACSL5Q9ULC5 683 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 FARSAQ9Y285 508 aaKnown RBP6.54□□□□□ -1.36
VPS53-213ENST00000572334 PCDHB3Q9Y5E6 796 aa6.54□□□□□ -1.36
VPS53-213ENST00000572334 CRYBG3Q68DQ2 2970 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms