RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 KIAA1614Q5VZ46 1190 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 OOSP2Q86WS3 158 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 REXO1L1PQ8IX06 675 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 CACNA2D3Q8IZS8 1091 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 NLGN4XQ8N0W4 816 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 IL22RA1Q8N6P7 574 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 ZSCAN1Q8NBB4 408 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 ACVR1CQ8NER5 493 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 NLGN4YQ8NFZ3 816 aaPredicted RBP19.78■□□□□ 0.76
CLK3-225ENST00000569063 OR4L1Q8NH43 312 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 SLC41A2Q96JW4 573 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 CHRAC1Q9NRG0 131 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 HRASLS2Q9NWW9 162 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 PCDHGA4Q9Y5G9 962 aa19.78■□□□□ 0.76
CLK3-225ENST00000569063 AHCTF1Q8WYP5 2266 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 IGHV5-51A0A0C4DH38 117 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 IFRD1O00458 451 aaPredicted RBP19.77■□□□□ 0.76
CLK3-225ENST00000569063 LIN7AO14910 233 aaPredicted RBP19.77■□□□□ 0.76
CLK3-225ENST00000569063 STK17BO94768 372 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 FTH1P02794 183 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 WT1P19544 449 aaPredicted RBP19.77■□□□□ 0.76
CLK3-225ENST00000569063 TPSB2P20231 275 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 PDHA2P29803 388 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 NPY2RP49146 381 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 PRAMEP78395 509 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 CDK16Q00536 496 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 TPSAB1Q15661 275 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 TAF1BQ53T94 588 aaPredicted RBP19.77■□□□□ 0.76
CLK3-225ENST00000569063 ZNF534Q76KX8 674 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 KMT5CQ86Y97 462 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 OR6P1Q8NGX9 317 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 OR6C1Q96RD1 312 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 FERD3LQ96RJ6 166 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 IL22Q9GZX6 179 aa19.77■□□□□ 0.76
CLK3-225ENST00000569063 TRIT1Q9H3H1 467 aaKnown RBP19.77■□□□□ 0.76
CLK3-225ENST00000569063 ATMQ13315 3056 aa19.77■□□□□ 0.75
CLK3-225ENST00000569063 OR6C74A6NCV1 312 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 TLCD2A6NGC4 264 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 DLGAP3O95886 979 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 OR56A5P0C7T3 313 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 FGF5P12034 268 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 PREPP48147 710 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 SESN2P58004 480 aaPredicted RBP19.76■□□□□ 0.75
CLK3-225ENST00000569063 MAP7Q14244 749 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 FASTKD1Q53R41 847 aaKnown RBP19.76■□□□□ 0.75
CLK3-225ENST00000569063 DNTTIP2Q5QJE6 756 aaKnown RBP19.76■□□□□ 0.75
CLK3-225ENST00000569063 ARMC6Q6NXE6 501 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 CYB5D1Q6P9G0 228 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 TIPARPQ7Z3E1 657 aaKnown RBP19.76■□□□□ 0.75
CLK3-225ENST00000569063 CARFQ8N187 725 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 OR4E2Q8NGC2 313 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 MS4A14Q96JA4 679 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 MAP3K3Q99759 626 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 MVB12BQ9H7P6 319 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 TREX1Q9NSU2 369 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 BFARQ9NZS9 450 aa19.76■□□□□ 0.75
CLK3-225ENST00000569063 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.75■□□□□ 0.75
CLK3-225ENST00000569063 F8W8V4 182 aa19.75■□□□□ 0.75
CLK3-225ENST00000569063 ZSCAN12O43309 604 aa19.75■□□□□ 0.75
CLK3-225ENST00000569063 OR1I1O60431 355 aa19.75■□□□□ 0.75
CLK3-225ENST00000569063 ITGB2P05107 769 aa19.75■□□□□ 0.75
CLK3-225ENST00000569063 LIFP15018 202 aa19.75■□□□□ 0.75
CLK3-225ENST00000569063 PPARGP37231 505 aaPredicted RBP19.75■□□□□ 0.75
CLK3-225ENST00000569063 CRADDP78560 199 aa19.75■□□□□ 0.75
CLK3-225ENST00000569063 BOP1Q14137 746 aaKnown RBP19.75■□□□□ 0.75
CLK3-225ENST00000569063 TTC27Q6P3X3 843 aa19.75■□□□□ 0.75
CLK3-225ENST00000569063 LRRC8BQ6P9F7 803 aa19.75■□□□□ 0.75
CLK3-225ENST00000569063 TFGQ92734 400 aaPredicted RBP19.75■□□□□ 0.75
CLK3-225ENST00000569063 NAP1L3Q99457 506 aaPredicted RBP19.75■□□□□ 0.75
CLK3-225ENST00000569063 TFB2MQ9H5Q4 396 aaKnown RBP19.75■□□□□ 0.75
CLK3-225ENST00000569063 UBA6A0AVT1 1052 aaPredicted RBP19.74■□□□□ 0.75
CLK3-225ENST00000569063 MAGEA6P43360 314 aa19.74■□□□□ 0.75
CLK3-225ENST00000569063 HSD11B2P80365 405 aa19.74■□□□□ 0.75
CLK3-225ENST00000569063 PLOD1Q02809 727 aaPredicted RBP19.74■□□□□ 0.75
CLK3-225ENST00000569063 ABHD18Q0P651 414 aa19.74■□□□□ 0.75
CLK3-225ENST00000569063 SEMA3AQ14563 771 aa19.74■□□□□ 0.75
CLK3-225ENST00000569063 CYP1B1Q16678 543 aa19.74■□□□□ 0.75
CLK3-225ENST00000569063 LARP7Q4G0J3 582 aaKnown RBP eCLIP19.74■□□□□ 0.75
CLK3-225ENST00000569063 AARS2Q5JTZ9 985 aaKnown RBP19.74■□□□□ 0.75
CLK3-225ENST00000569063 BPHLQ86WA6 291 aaPredicted RBP19.74■□□□□ 0.75
CLK3-225ENST00000569063 SIDT2Q8NBJ9 832 aaKnown RBP19.74■□□□□ 0.75
CLK3-225ENST00000569063 PHC3Q8NDX5 983 aa19.74■□□□□ 0.75
CLK3-225ENST00000569063 LCN9Q8WX39 176 aa19.74■□□□□ 0.75
CLK3-225ENST00000569063 ELMO1Q92556 727 aa19.74■□□□□ 0.75
CLK3-225ENST00000569063 MAGOHBQ96A72 148 aaKnown RBP19.74■□□□□ 0.75
CLK3-225ENST00000569063 SLC12A9Q9BXP2 914 aa19.74■□□□□ 0.75
CLK3-225ENST00000569063 ULBP3Q9BZM4 244 aa19.74■□□□□ 0.75
CLK3-225ENST00000569063 KCNF1Q9H3M0 494 aa19.74■□□□□ 0.75
CLK3-225ENST00000569063 SRMSQ9H3Y6 488 aa19.74■□□□□ 0.75
CLK3-225ENST00000569063 CATSPERZQ9NTU4 200 aa19.74■□□□□ 0.75
CLK3-225ENST00000569063 SMG1Q96Q15 3661 aaKnown RBP19.74■□□□□ 0.75
CLK3-225ENST00000569063 TCRBV7S3A2A0A539 114 aa19.73■□□□□ 0.75
CLK3-225ENST00000569063 SLC5A10A0PJK1 596 aa19.73■□□□□ 0.75
CLK3-225ENST00000569063 MATN2O00339 956 aa19.73■□□□□ 0.75
CLK3-225ENST00000569063 C1QL1O75973 258 aa19.73■□□□□ 0.75
CLK3-225ENST00000569063 PRB1P04280 392 aa19.73■□□□□ 0.75
CLK3-225ENST00000569063 FOLR1P15328 257 aa19.73■□□□□ 0.75
CLK3-225ENST00000569063 ZNF28P17035 718 aa19.73■□□□□ 0.75
CLK3-225ENST00000569063 ACADLP28330 430 aa19.73■□□□□ 0.75
CLK3-225ENST00000569063 KPNA2P52292 529 aaKnown RBP19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms