RNA–Protein interactions for RNA: ENST00000567737.1

SMG1-213, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, human

TSL 3

Gene SMG1, Length 721 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG1-213	ENST00000567737	ZFYVE27	Q5T4F4	411 aa		13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	ERMARD	Q5T6L9	678 aa		13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	PDPK2P	Q6A1A2	396 aa		13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	TMEM200A	Q86VY9	491 aa		13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	TRAM1L1	Q8N609	369 aa		13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	SPATA3	Q8NHX4	192 aa		13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	PROKR1	Q8TCW9	393 aa		13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	N4BP2L2	Q92802	583 aa	Predicted RBP	13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	THOC3	Q96J01	351 aa	Known RBP	13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	SNRNP25	Q9BV90	132 aa	Known RBP	13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	NUP85	Q9BW27	656 aa		13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	AP1M1	Q9BXS5	423 aa		13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	ABI3	Q9P2A4	366 aa		13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	CDC23	Q9UJX2	597 aa		13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	RPL26L1	Q9UNX3	145 aa	Known RBP	13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	CDYL	Q9Y232	598 aa		13.34	□□□□□ -0.27
SMG1-213	ENST00000567737	TRAV17	A0A0B4J275	112 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	DYTN	A2CJ06	578 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	MTHFD1	P11586	935 aa	Known RBP	13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	UNG	P13051	313 aa	Predicted RBP	13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	MMP11	P24347	488 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	LMAN1	P49257	510 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	ZNF135	P52742	658 aa	Predicted RBP	13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	SRSF11	Q05519	484 aa	Known RBP	13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	FOXD4	Q12950	439 aa	Predicted RBP	13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	GALNT3	Q14435	633 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	SLC9A5	Q14940	896 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	C3AR1	Q16581	482 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	LONRF1	Q17RB8	773 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	KLHDC7A	Q5VTJ3	777 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	RHBDD2	Q6NTF9	364 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	DCUN1D2	Q6PH85	259 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	C11orf96	Q7Z7L8	435 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	ACBD4	Q8NC06	268 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	TIGD1	Q96MW7	591 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	NAA15	Q9BXJ9	866 aa	Known RBP	13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	ZWILCH	Q9H900	591 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	PCDH9	Q9HC56	1237 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	RAD18	Q9NS91	495 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	TNFRSF10D	Q9UBN6	386 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	TINAG	Q9UJW2	476 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	POMT2	Q9UKY4	750 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	CFAP20	Q9Y6A4	193 aa	Known RBP	13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	AP1M2	Q9Y6Q5	423 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	PCM1	Q15154	2024 aa		13.33	□□□□□ -0.28
SMG1-213	ENST00000567737	GSAP	A4D1B5	854 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	MATN2	O00339	956 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	BIN1	O00499	593 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	CNOT3	O75175	753 aa	Known RBP	13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	PRL	P01236	227 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	UCHL3	P15374	230 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	CHRNB2	P17787	502 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	HLA-DPA1	P20036	260 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	CES1	P23141	567 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	MST1	P26927	711 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	HCAR3	P49019	387 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	DCDC1	P59894	354 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	DSC2	Q02487	901 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	DPYS	Q14117	519 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	MSS51	Q4VC12	460 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	DPY19L2P1	Q6NXN4	242 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	MRPL14	Q6P1L8	145 aa	Known RBP	13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	TMCO3	Q6UWJ1	677 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	AMZ2	Q86W34	360 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	PHF13	Q86YI8	300 aa	Predicted RBP	13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	GPR26	Q8NDV2	337 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	DNAJB8	Q8NHS0	232 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	ADAMTS18	Q8TE60	1221 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	ZFPM2	Q8WW38	1151 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	VPS50	Q96JG6	964 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	MAGED4	Q96JG8	741 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	TTC25	Q96NG3	672 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	TREX2	Q9BQ50	279 aa	Predicted RBP	13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	STK33	Q9BYT3	514 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	GDPD2	Q9HCC8	539 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	DLL4	Q9NR61	685 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	TXLNG	Q9NUQ3	528 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	CWC15	Q9P013	229 aa	Known RBP	13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	PCSK1N	Q9UHG2	260 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	SLC24A2	Q9UI40	661 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	RPH3A	Q9Y2J0	694 aa	Predicted RBP	13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	TTLL3	Q9Y4R7	772 aa		13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	NCOA6	Q14686	2063 aa	Predicted RBP	13.32	□□□□□ -0.28
SMG1-213	ENST00000567737	SPTB	P11277	2137 aa		13.31	□□□□□ -0.28
SMG1-213	ENST00000567737	GOLGA6L4	A6NEF3	574 aa		13.31	□□□□□ -0.28
SMG1-213	ENST00000567737	PMPCB	O75439	489 aa		13.31	□□□□□ -0.28
SMG1-213	ENST00000567737	GFPT2	O94808	682 aa		13.31	□□□□□ -0.28
SMG1-213	ENST00000567737	RASAL1	O95294	804 aa		13.31	□□□□□ -0.28
SMG1-213	ENST00000567737	ST6GAL1	P15907	406 aa		13.31	□□□□□ -0.28
SMG1-213	ENST00000567737	DMPK	Q09013	629 aa		13.31	□□□□□ -0.28
SMG1-213	ENST00000567737	MAN2A1	Q16706	1144 aa		13.31	□□□□□ -0.28
SMG1-213	ENST00000567737	TUBB8	Q3ZCM7	444 aa		13.31	□□□□□ -0.28
SMG1-213	ENST00000567737	KHDC1	Q4VXA5	237 aa	Known RBP	13.31	□□□□□ -0.28
SMG1-213	ENST00000567737	BIVM	Q86UB2	503 aa		13.31	□□□□□ -0.28
SMG1-213	ENST00000567737	TEX26	Q8N6G2	289 aa		13.31	□□□□□ -0.28
SMG1-213	ENST00000567737	GDAP1	Q8TB36	358 aa		13.31	□□□□□ -0.28
SMG1-213	ENST00000567737	NINJ1	Q92982	152 aa		13.31	□□□□□ -0.28
SMG1-213	ENST00000567737	TMEM121	Q9BTD3	319 aa		13.31	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms