RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CCDC162PA2VCL2 907 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 NKX2-8O15522 239 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 NRDCO43847 1150 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 AP2A2O94973 939 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 APRTP07741 180 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 FAM87AP0C7U9 286 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 ZSCAN5DPP0CG00 497 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 FGF5P12034 268 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 FOLR1P15328 257 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 POLR2CP19387 275 aaPredicted RBP20.2■□□□□ 0.82
CLN3-219ENST00000565778 ADRA1DP25100 572 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 PSMA3P25788 255 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 PDHA2P29803 388 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 NSG1P42857 185 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 ARCN1P48444 511 aaKnown RBP20.2■□□□□ 0.82
CLN3-219ENST00000565778 PRKAA1Q13131 559 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 MAP7Q14244 749 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 KCNAB1Q14722 419 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 GSTA5Q7RTV2 222 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 KMT5CQ86Y97 462 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 GALNT6Q8NCL4 622 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 ACVR1CQ8NER5 493 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 MAIP1Q8WWC4 291 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 LCN9Q8WX39 176 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.2■□□□□ 0.82
CLN3-219ENST00000565778 SLC41A2Q96JW4 573 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 TTC1Q99614 292 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 LNPEPQ9UIQ6 1025 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 RARRES3Q9UL19 164 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 DRG1Q9Y295 367 aaKnown RBP20.2■□□□□ 0.82
CLN3-219ENST00000565778 RPS6KL1Q9Y6S9 549 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 KALRNO60229 2985 aa20.2■□□□□ 0.82
CLN3-219ENST00000565778 TLCD2A6NGC4 264 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 B8ZZF3 427 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 GSTM1P09488 218 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 CCNYL3P0C7X3 344 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 PRKAR1AP10644 381 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 SFTPCP11686 197 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 RPL22P35268 128 aaKnown RBP20.19■□□□□ 0.82
CLN3-219ENST00000565778 STAT5AP42229 794 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 CD151P48509 253 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 HSD11B2P80365 405 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 GSTM4Q03013 218 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 ACY1Q03154 408 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 RPA4Q13156 261 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 TUBB3Q13509 450 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 SEMA5AQ13591 1074 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 ITIH4Q14624 930 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.19■□□□□ 0.82
CLN3-219ENST00000565778 TSTD2Q5T7W7 516 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 LYPLAL1Q5VWZ2 237 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 GLIS1Q8NBF1 620 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 TRIM58Q8NG06 486 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 OR6P1Q8NGX9 317 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 STAMBPL1Q96FJ0 436 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 OR52A5Q9H2C5 316 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 SRMSQ9H3Y6 488 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 SLC2A6Q9UGQ3 507 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 IL17BQ9UHF5 180 aa20.19■□□□□ 0.82
CLN3-219ENST00000565778 ZNF106Q9H2Y7 1883 aaKnown RBP20.19■□□□□ 0.82
CLN3-219ENST00000565778 QSOX1O00391 747 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 CEP104O60308 925 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 FGGP02679 453 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 EBLN1P0CF75 366 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 FOXN2P32314 431 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 PREPP48147 710 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 PRKG2Q13237 762 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 BRD3Q15059 726 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 SIX1Q15475 284 aaPredicted RBP20.18■□□□□ 0.82
CLN3-219ENST00000565778 BORAQ6PGQ7 559 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 CERS6Q6ZMG9 384 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 BPHLQ86WA6 291 aaPredicted RBP20.18■□□□□ 0.82
CLN3-219ENST00000565778 OR13J1Q8NGT2 312 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 TFGQ92734 400 aaPredicted RBP20.18■□□□□ 0.82
CLN3-219ENST00000565778 CATSPER2Q96P56 530 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 RANBP9Q96S59 729 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 CASS4Q9NQ75 786 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 FGF21Q9NSA1 209 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 PADI1Q9ULC6 663 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 PRSS21Q9Y6M0 314 aa20.18■□□□□ 0.82
CLN3-219ENST00000565778 FASNP49327 2511 aaKnown RBP20.17■□□□□ 0.82
CLN3-219ENST00000565778 ZBTB11O95625 1053 aaPredicted RBP20.17■□□□□ 0.82
CLN3-219ENST00000565778 GOT2P00505 430 aaKnown RBP20.17■□□□□ 0.82
CLN3-219ENST00000565778 FTH1P02794 183 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 OR56A5P0C7T3 313 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 DLSTP36957 453 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 KPNA2P52292 529 aaKnown RBP20.17■□□□□ 0.82
CLN3-219ENST00000565778 PRAMEP78395 509 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 MC1RQ01726 317 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 NFATC3Q12968 1075 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 ZNF658BQ4V348 819 aaPredicted RBP20.17■□□□□ 0.82
CLN3-219ENST00000565778 TMTC4Q5T4D3 741 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 C16orf46Q6P387 395 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 DRICH1Q6PGQ1 229 aaPredicted RBP20.17■□□□□ 0.82
CLN3-219ENST00000565778 FBXO38Q6PIJ6 1188 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 C4orf22Q6V702 233 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 NLRP9Q7RTR0 991 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 OR4L1Q8NH43 312 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 ELMO1Q92556 727 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 ZNF778Q96MU6 729 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms