RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 MSNP26038 577 aaKnown RBP14.48□□□□□ -0.09
CLN3-213ENST00000565047 RPL22P35268 128 aaKnown RBP14.48□□□□□ -0.09
CLN3-213ENST00000565047 CD151P48509 253 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 RPA4Q13156 261 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 ITIH4Q14624 930 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 KCNAB1Q14722 419 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 SKIDA1Q1XH10 827 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 CRTC2Q53ET0 693 aaPredicted RBP14.48□□□□□ -0.09
CLN3-213ENST00000565047 SEL1L2Q5TEA6 688 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 KLHL35Q6PF15 583 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 ZNF534Q76KX8 674 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 ZNF605Q86T29 641 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 CARFQ8N187 725 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 ESX1Q8N693 406 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 ULBP3Q9BZM4 244 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 TFB2MQ9H5Q4 396 aaKnown RBP14.48□□□□□ -0.09
CLN3-213ENST00000565047 FAM8A1Q9UBU6 413 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 ZNF148Q9UQR1 794 aa14.48□□□□□ -0.09
CLN3-213ENST00000565047 DRG1Q9Y295 367 aaKnown RBP14.48□□□□□ -0.09
CLN3-213ENST00000565047 CCDC78A2IDD5 438 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 OR6C74A6NCV1 312 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 TLCD2A6NGC4 264 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 ZNF891A8MT65 544 aaPredicted RBP14.47□□□□□ -0.09
CLN3-213ENST00000565047 KIAA0754O94854 1291 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 IFNB1P01574 187 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 GSTM1P09488 218 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 TPBGLP0DKB5 382 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 ACADLP28330 430 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 NDUFS1P28331 727 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 GSTM4Q03013 218 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 SNX1Q13596 522 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 SEPT6Q14141 434 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 TSTD2Q5T7W7 516 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 PWWP2BQ6NUJ5 590 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 C6orf15Q6UXA7 325 aaPredicted RBP14.47□□□□□ -0.09
CLN3-213ENST00000565047 TAS2R42Q7RTR8 314 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 PPP1R3BQ86XI6 285 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 GALNT6Q8NCL4 622 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 ACVR1CQ8NER5 493 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 OR4E2Q8NGC2 313 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 HDAC10Q969S8 669 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 RNF31Q96EP0 1072 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 FCRL4Q96PJ5 515 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 AKIRIN1Q9H9L7 192 aaPredicted RBP14.47□□□□□ -0.09
CLN3-213ENST00000565047 GPN2Q9H9Y4 310 aaPredicted RBP14.47□□□□□ -0.09
CLN3-213ENST00000565047 LZTFL1Q9NQ48 299 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 RAB6BQ9NRW1 208 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 GEMIN8Q9NWZ8 242 aaKnown RBP14.47□□□□□ -0.09
CLN3-213ENST00000565047 HEBP2Q9Y5Z4 205 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 RPS6KL1Q9Y6S9 549 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 COLEC10Q9Y6Z7 277 aa14.47□□□□□ -0.09
CLN3-213ENST00000565047 SLC5A10A0PJK1 596 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 HEATR9A2RTY3 570 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 GOLGA6L6A8MZA4 724 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 BHMG1C9JSJ3 638 aaPredicted RBP14.46□□□□□ -0.09
CLN3-213ENST00000565047 BTN3A3O00478 584 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 OR1I1O60431 355 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 CCDC175P0C221 793 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 EBLN1P0CF75 366 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 ADRA1DP25100 572 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 OAS2P29728 719 aaKnown RBP14.46□□□□□ -0.09
CLN3-213ENST00000565047 NSG1P42857 185 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 PREPP48147 710 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 HSD11B2P80365 405 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 LAMB3Q13751 1172 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 BOP1Q14137 746 aaKnown RBP14.46□□□□□ -0.09
CLN3-213ENST00000565047 SEMA3AQ14563 771 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 PLCL1Q15111 1095 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 DNTTIP2Q5QJE6 756 aaKnown RBP14.46□□□□□ -0.09
CLN3-213ENST00000565047 FBXO38Q6PIJ6 1188 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 ZNF517Q6ZMY9 492 aaPredicted RBP14.46□□□□□ -0.09
CLN3-213ENST00000565047 BPHLQ86WA6 291 aaPredicted RBP14.46□□□□□ -0.09
CLN3-213ENST00000565047 OOSP2Q86WS3 158 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 PHC3Q8NDX5 983 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 PEX13Q92968 403 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 ZNF501Q96CX3 271 aaPredicted RBP14.46□□□□□ -0.09
CLN3-213ENST00000565047 ELMO2Q96JJ3 720 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 EFHD1Q9BUP0 239 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 PITPNM3Q9BZ71 974 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 SMARCAL1Q9NZC9 954 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 PAK5Q9P286 719 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 POMT2Q9UKY4 750 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 BTRCQ9Y297 605 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 ZKSCAN5Q9Y2L8 839 aa14.46□□□□□ -0.09
CLN3-213ENST00000565047 MRPS18BQ9Y676 258 aaKnown RBP14.46□□□□□ -0.09
CLN3-213ENST00000565047 GOT2P00505 430 aaKnown RBP14.45□□□□□ -0.1
CLN3-213ENST00000565047 POLR2CP19387 275 aaPredicted RBP14.45□□□□□ -0.1
CLN3-213ENST00000565047 CDC20Q12834 499 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 TUBB3Q13509 450 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 GSE1Q14687 1217 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 ZNF789Q5FWF6 425 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 BORAQ6PGQ7 559 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 ADGRF3Q8IZF5 1079 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 DNAAF3Q8N9W5 541 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 SIDT2Q8NBJ9 832 aaKnown RBP14.45□□□□□ -0.1
CLN3-213ENST00000565047 SLC38A9Q8NBW4 561 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 OR52E1Q8NGJ3 308 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 STARD8Q92502 1023 aa14.45□□□□□ -0.1
CLN3-213ENST00000565047 TFGQ92734 400 aaPredicted RBP14.45□□□□□ -0.1
CLN3-213ENST00000565047 CATSPER2Q96P56 530 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms