RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 KLHL25Q9H0H3 589 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 WWP1Q9H0M0 922 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 MAGEE1Q9HCI5 957 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 BPIFA1Q9NP55 256 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 IFT80Q9P2H3 777 aaPredicted RBP7.11□□□□□ -1.27
VPS4A-203ENST00000564399 NFKBIL1Q9UBC1 381 aaPredicted RBP7.11□□□□□ -1.27
VPS4A-203ENST00000564399 MYO1AQ9UBC5 1043 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 FAM8A1Q9UBU6 413 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 POMT2Q9UKY4 750 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 ZNF711Q9Y462 761 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 SCINQ9Y6U3 715 aa7.11□□□□□ -1.27
VPS4A-203ENST00000564399 NIPBLQ6KC79 2804 aaeCLIP7.1□□□□□ -1.27
VPS4A-203ENST00000564399 CCDC66A2RUB6 948 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 AGPSO00116 658 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 MATN2O00339 956 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 CCL21O00585 134 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 ALOX12BO75342 701 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 FTLP02792 175 aaPredicted RBP7.1□□□□□ -1.27
VPS4A-203ENST00000564399 MMP2P08253 660 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 ST6GAL1P15907 406 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 SSTR2P30874 369 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 CTSCP53634 463 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 FOXL2P58012 376 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 DCDP81605 110 aaKnown RBP7.1□□□□□ -1.27
VPS4A-203ENST00000564399 OTUD4Q01804 1114 aaKnown RBP7.1□□□□□ -1.27
VPS4A-203ENST00000564399 DMPKQ09013 629 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 PRKD1Q15139 912 aaPredicted RBP7.1□□□□□ -1.27
VPS4A-203ENST00000564399 TLR1Q15399 786 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 PCSK7Q16549 785 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 ZNF630Q2M218 657 aaPredicted RBP7.1□□□□□ -1.27
VPS4A-203ENST00000564399 ZNF789Q5FWF6 425 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 METRNLQ641Q3 311 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 ZNF385CQ66K41 422 aaPredicted RBP7.1□□□□□ -1.27
VPS4A-203ENST00000564399 B3GNTL1Q67FW5 361 aaPredicted RBP7.1□□□□□ -1.27
VPS4A-203ENST00000564399 FCRL6Q6DN72 434 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 TXNRD3NBQ6F5E7 133 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 CCDC70Q6NSX1 233 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 SPNS3Q6ZMD2 512 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 PPP1R32Q7Z5V6 425 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 HOOK3Q86VS8 718 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 ZNF808Q8N4W9 903 aaPredicted RBP7.1□□□□□ -1.27
VPS4A-203ENST00000564399 BEND7Q8N7W2 519 aaPredicted RBP7.1□□□□□ -1.27
VPS4A-203ENST00000564399 RASGEF1AQ8N9B8 481 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 LCN9Q8WX39 176 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 AGAP3Q96P47 875 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 TSGA13Q96PP4 275 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 VPS35Q96QK1 796 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 SLX1AQ9BQ83 275 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 TRIM8Q9BZR9 551 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 XPO4Q9C0E2 1151 aaKnown RBP7.1□□□□□ -1.27
VPS4A-203ENST00000564399 SRMSQ9H3Y6 488 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 DEF6Q9H4E7 631 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 EPS8L2Q9H6S3 715 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 KIR3DX1Q9H7L2 352 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 MRPL47Q9HD33 250 aaKnown RBP7.1□□□□□ -1.27
VPS4A-203ENST00000564399 SH3BGRL2Q9UJC5 107 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 TMPRSS11EQ9UL52 423 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 CDYLQ9Y232 598 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 DNMT3AQ9Y6K1 912 aaPredicted RBP7.1□□□□□ -1.27
VPS4A-203ENST00000564399 COLEC10Q9Y6Z7 277 aa7.1□□□□□ -1.27
VPS4A-203ENST00000564399 FBN3Q75N90 2809 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 CCDC78A2IDD5 438 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 KCNK1O00180 336 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 PRICKLE3O43900 615 aaPredicted RBP7.09□□□□□ -1.27
VPS4A-203ENST00000564399 UGT1A9O60656 530 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 OR2B3O76000 313 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 NADKO95544 446 aaPredicted RBP7.09□□□□□ -1.27
VPS4A-203ENST00000564399 POLBP06746 335 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 CD48P09326 243 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 SLC35G4P0C7Q5 338 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 PVRP15151 417 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 UGT1A6P19224 532 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 MX2P20592 715 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 CAPN3P20807 821 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 UGT1A1P22309 533 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 UGT1A4P22310 534 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 NDUFS1P28331 727 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 PRDX3P30048 256 aaKnown RBP7.09□□□□□ -1.27
VPS4A-203ENST00000564399 AKT1P31749 480 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 GJC1P36383 396 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 UBXN1Q04323 297 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 PIGHQ14442 188 aaPredicted RBP7.09□□□□□ -1.27
VPS4A-203ENST00000564399 PAFAH1B3Q15102 231 aaKnown RBP7.09□□□□□ -1.27
VPS4A-203ENST00000564399 TESK1Q15569 626 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 ASIC2Q16515 512 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 PPP2R5EQ16537 467 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 LONRF2Q1L5Z9 754 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 LDLRAP1Q5SW96 308 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 FNBP1LQ5T0N5 605 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 ZFYVE27Q5T4F4 411 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 CCDC183Q5T5S1 534 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 PRAMEF13Q5VWM6 474 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 NCBP2-AS2Q69YL0 99 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 MTFR2Q6P444 385 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 TMEM207Q6UWW9 146 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 GFRALQ6UXV0 394 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 RPTNQ6XPR3 784 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 IRF2BP2Q7Z5L9 587 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 CDH24Q86UP0 819 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 NT5DC3Q86UY8 548 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms