RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 FAM96AQ9H5X1 160 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 MLXIPLQ9NP71 852 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 TFR2Q9UP52 801 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 BTRCQ9Y297 605 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 COLEC10Q9Y6Z7 277 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 UTP20O75691 2785 aaKnown RBP16.41■□□□□ 0.22
CLN3-211ENST00000564091 TEX15Q9BXT5 2789 aa16.41■□□□□ 0.22
CLN3-211ENST00000564091 SPTBN1Q01082 2364 aaKnown RBP16.41■□□□□ 0.22
CLN3-211ENST00000564091 H7C0C1 242 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 ATP5OP48047 213 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 GEMP55040 296 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 TMPRSS15P98073 1019 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 PRKAA1Q13131 559 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 C4orf17Q53FE4 359 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 RANBP10Q6VN20 620 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 MICALCLQ6ZW33 695 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 GALNT11Q8NCW6 608 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 OR13C4Q8NGS5 318 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 OR1L3Q8NH93 324 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 ADAMTS17Q8TE56 1095 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 KRT35Q92764 455 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 CLIP3Q96DZ5 547 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 DCUN1D1Q96GG9 259 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 LRFN5Q96NI6 719 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 LATS2Q9NRM7 1088 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 CRLS1Q9UJA2 301 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 POMT2Q9UKY4 750 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 SNX7Q9UNH6 387 aa16.4■□□□□ 0.22
CLN3-211ENST00000564091 PCDHGA9Q9Y5G4 932 aaKnown RBP16.4■□□□□ 0.22
CLN3-211ENST00000564091 CCDC66A2RUB6 948 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 GSAPA4D1B5 854 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 C5orf60A6NFR6 353 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 CCL22O00626 93 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 ANXA9O76027 345 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 AGFG2O95081 481 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 NDUFS1P28331 727 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 ADRA1AP35348 466 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 MAGEA1P43355 309 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 PREPP48147 710 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 GSDMDP57764 484 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 FHL5Q5TD97 284 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 BBS12Q6ZW61 710 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 LURAP1LQ8IV03 231 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 DSELQ8IZU8 1212 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 CARFQ8N187 725 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 HM13Q8TCT9 377 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 LCN9Q8WX39 176 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 CPT1BQ92523 772 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 FERD3LQ96RJ6 166 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 MFRPQ9BY79 579 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 KLHL25Q9H0H3 589 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 SRMSQ9H3Y6 488 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 FANCEQ9HB96 536 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 C1GALT1Q9NS00 363 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 PCMTD2Q9NV79 361 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 LUZP4Q9P127 313 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 MAP4K5Q9Y4K4 846 aa16.39■□□□□ 0.21
CLN3-211ENST00000564091 KLHL33A6NCF5 533 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 A6NL46 340 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 TMEM150CB9EJG8 249 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 BTN3A3O00478 584 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 TMEM63AO94886 807 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 CAPN1P07384 714 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 RAB40ALP0C0E4 278 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 ST6GAL1P15907 406 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 PSMB4P28070 264 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 PRDX3P30048 256 aaKnown RBP16.38■□□□□ 0.21
CLN3-211ENST00000564091 RORAP35398 523 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 LMAN1P49257 510 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 PRLHRP49683 370 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 HADHBP55084 474 aaKnown RBP16.38■□□□□ 0.21
CLN3-211ENST00000564091 ITGA1P56199 1179 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 MSLNQ13421 630 aaPredicted RBP16.38■□□□□ 0.21
CLN3-211ENST00000564091 PTCHD3Q3KNS1 767 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 PRR30Q53SZ7 412 aaPredicted RBP16.38■□□□□ 0.21
CLN3-211ENST00000564091 ZNF789Q5FWF6 425 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 CCDC181Q5TID7 509 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 PAPD7Q5XG87 772 aaKnown RBP16.38■□□□□ 0.21
CLN3-211ENST00000564091 ITPRIPL1Q6GPH6 555 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 PHC3Q8NDX5 983 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 ACVR1CQ8NER5 493 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 FDCSPQ8NFU4 85 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 RBM41Q96IZ5 413 aaKnown RBP16.38■□□□□ 0.21
CLN3-211ENST00000564091 CCM2Q9BSQ5 444 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 NLNQ9BYT8 704 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 ACTR5Q9H9F9 607 aaPredicted RBP16.38■□□□□ 0.21
CLN3-211ENST00000564091 TCFL5Q9UL49 500 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 HEBP2Q9Y5Z4 205 aa16.38■□□□□ 0.21
CLN3-211ENST00000564091 MACROD2A1Z1Q3 448 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 AGAP14A8MT82 685 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 AKR1B15C9JRZ8 316 aaPredicted RBP16.37■□□□□ 0.21
CLN3-211ENST00000564091 APOC4-APOC2K7ER74 178 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 BTN3A1O00481 513 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 ZNF185O15231 689 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 CEACAM4O75871 244 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 SORBS2O94875 1100 aaKnown RBP16.37■□□□□ 0.21
CLN3-211ENST00000564091 APOC2P02655 101 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 PYGMP11217 842 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 RALBP11234 206 aa16.37■□□□□ 0.21
CLN3-211ENST00000564091 ATP1B2P14415 290 aaPredicted RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms