RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TMEM139Q8IV31 216 aa16.77■□□□□ 0.28
VPS9D1-203ENST00000563798 SYCE1Q8N0S2 351 aa16.77■□□□□ 0.28
VPS9D1-203ENST00000563798 LILRA3Q8N6C8 439 aaPredicted RBP16.77■□□□□ 0.28
VPS9D1-203ENST00000563798 ACVR1CQ8NER5 493 aa16.77■□□□□ 0.28
VPS9D1-203ENST00000563798 SEC14L1Q92503 715 aa16.77■□□□□ 0.28
VPS9D1-203ENST00000563798 TUBB2BQ9BVA1 445 aa16.77■□□□□ 0.28
VPS9D1-203ENST00000563798 GPR87Q9BY21 358 aa16.77■□□□□ 0.28
VPS9D1-203ENST00000563798 TRIM4Q9C037 500 aa16.77■□□□□ 0.28
VPS9D1-203ENST00000563798 OR52A5Q9H2C5 316 aa16.77■□□□□ 0.28
VPS9D1-203ENST00000563798 LRRC40Q9H9A6 602 aa16.77■□□□□ 0.28
VPS9D1-203ENST00000563798 OR6C74A6NCV1 312 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 DDX3YO15523 660 aaKnown RBP16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 METTL18O95568 372 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 POLBP06746 335 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 FURINP09958 794 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 MSL3P1P0C860 447 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 ACRV1P26436 265 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 MC4RP32245 332 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 CASRP41180 1078 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 ARL4DP49703 201 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 KPNA2P52292 529 aaKnown RBP16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 TLE1Q04724 770 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 LAMB3Q13751 1172 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 P3H1Q32P28 736 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 ARMC6Q6NXE6 501 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 CERS6Q6ZMG9 384 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 ARHGEF18Q6ZSZ5 1173 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 PTRH1Q86Y79 214 aaKnown RBP16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 UBL4BQ8N7F7 174 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 FAM71DQ8N9W8 422 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 CT55Q8WUE5 264 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 NAT14Q8WUY8 206 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 ZNF501Q96CX3 271 aaPredicted RBP16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 DNAJC1Q96KC8 554 aaKnown RBP16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 LRFN5Q96NI6 719 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 BAG1Q99933 345 aaPredicted RBP16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 TFB2MQ9H5Q4 396 aaKnown RBP16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 COG4Q9H9E3 785 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 SYTL2Q9HCH5 934 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 C1GALT1Q9NS00 363 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 KCND1Q9NSA2 647 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 POMT2Q9UKY4 750 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 POLHQ9Y253 713 aa16.76■□□□□ 0.27
VPS9D1-203ENST00000563798 MAST4O15021 2626 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 PSMD3O43242 534 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 AP2A2O94973 939 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 TMPRSS15P98073 1019 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 ERV3-1Q14264 604 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 GSE1Q14687 1217 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 TMTC4Q5T4D3 741 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 KIAA1328Q86T90 577 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 SERPINA9Q86WD7 417 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 APLFQ8IW19 511 aaPredicted RBP16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 TXLNBQ8N3L3 684 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 STYXQ8WUJ0 223 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 UBE2Q2Q8WVN8 375 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 CDKN2AIPNLQ96HQ2 116 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 HES6Q96HZ4 224 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 FAM96AQ9H5X1 160 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 MVB12BQ9H7P6 319 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 VPS37BQ9H9H4 285 aa16.75■□□□□ 0.27
VPS9D1-203ENST00000563798 MROH6A6NGR9 719 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 CCL22O00626 93 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 CPNE3O75131 537 aaKnown RBP16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 KATNA1O75449 491 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 AP2A1O95782 977 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 NTRK1P04629 796 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 CDKN1CP49918 316 aaPredicted RBP16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 PMS2P54278 862 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 CACNG1Q06432 222 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 KIF5AQ12840 1032 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 PRKAA1Q13131 559 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 SKIDA1Q1XH10 827 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 LACTB2Q53H82 288 aaPredicted RBP16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 TCTN3Q6NUS6 607 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 OR4E2Q8NGC2 313 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 RNF31Q96EP0 1072 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 PITPNM3Q9BZ71 974 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 EPN3Q9H201 632 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 AKIRIN1Q9H9L7 192 aaPredicted RBP16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 ZNF71Q9NQZ8 489 aaPredicted RBP16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 FAM8A1Q9UBU6 413 aa16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 R3HDM2Q9Y2K5 976 aaKnown RBP16.74■□□□□ 0.27
VPS9D1-203ENST00000563798 PIPSLA2A3N6 862 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 IFRD1O00458 451 aaPredicted RBP16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 SCRG1O75711 98 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 TPH1P17752 444 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 POLR2CP19387 275 aaPredicted RBP16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 PTPN4P29074 926 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 STIP1P31948 543 aaKnown RBP16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 GDF10P55107 478 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 BOP1Q14137 746 aaKnown RBP16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 KRT33BQ14525 404 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 ITIH4Q14624 930 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 UGT8Q16880 541 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 ZRANB3Q5FWF4 1079 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 IZUMO3Q5VZ72 239 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 SYVN1Q86TM6 617 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 LINC00523Q86TU6 105 aa16.73■□□□□ 0.27
VPS9D1-203ENST00000563798 PIANPQ8IYJ0 282 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms