RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 IZUMO3Q5VZ72 239 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 ITPRIPL1Q6GPH6 555 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 CAPRIN2Q6IMN6 1127 aaKnown RBP12.64□□□□□ -0.39
SF3B3-202ENST00000562722 SLC38A9Q8NBW4 561 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 LCN9Q8WX39 176 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 FERD3LQ96RJ6 166 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 FERMT1Q9BQL6 677 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 CCM2Q9BSQ5 444 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 HEMGNQ9BXL5 484 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 MFRPQ9BY79 579 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 GBA3Q9H227 469 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 SRMSQ9H3Y6 488 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 GOLPH3Q9H4A6 298 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 ACTR5Q9H9F9 607 aaPredicted RBP12.64□□□□□ -0.39
SF3B3-202ENST00000562722 LATS2Q9NRM7 1088 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 LUZP4Q9P127 313 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 BTRCQ9Y297 605 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.64□□□□□ -0.39
SF3B3-202ENST00000562722 ZNF451Q9Y4E5 1061 aa12.64□□□□□ -0.39
SF3B3-202ENST00000562722 hCG_1818297A0A087WSY0 165 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 CCDC66A2RUB6 948 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 CFAP99D6REC4 459 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 MATN2O00339 956 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 IFRD1O00458 451 aaPredicted RBP12.63□□□□□ -0.39
SF3B3-202ENST00000562722 ZNF185O15231 689 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 DPM1O60762 260 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 TMEM63AO94886 807 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 LCA5LO95447 670 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 ATXN8OSP0DMR3 200 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 RBL1P28749 1068 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 TMPRSS15P98073 1019 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 PRPSAP1Q14558 356 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 PLEKHS1Q5SXH7 462 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 FAM69BQ5VUD6 431 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 LCN10Q6JVE6 187 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 VSTM4Q8IW00 320 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 KATNAL2Q8IYT4 538 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 RCOR2Q8IZ40 523 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 DSELQ8IZU8 1212 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 LILRA3Q8N6C8 439 aaPredicted RBP12.63□□□□□ -0.39
SF3B3-202ENST00000562722 ACVR1CQ8NER5 493 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 HM13Q8TCT9 377 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 ULK4Q96C45 1275 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 RBM41Q96IZ5 413 aaKnown RBP12.63□□□□□ -0.39
SF3B3-202ENST00000562722 LRFN5Q96NI6 719 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 FAM96AQ9H5X1 160 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 C10orf88Q9H8K7 445 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 SLAMF7Q9NQ25 335 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 C1GALT1Q9NS00 363 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 PLEKHB1Q9UF11 243 aaPredicted RBP12.63□□□□□ -0.39
SF3B3-202ENST00000562722 POMT2Q9UKY4 750 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 TCFL5Q9UL49 500 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 INTUQ9ULD6 942 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 ALG6Q9Y672 507 aa12.63□□□□□ -0.39
SF3B3-202ENST00000562722 C5orf60A6NFR6 353 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 C9J4A7 227 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 STK10O94804 968 aaKnown RBP12.62□□□□□ -0.39
SF3B3-202ENST00000562722 CRTAMO95727 393 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 RAB40ALP0C0E4 278 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 ITGALP20701 1170 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 CTNNA2P26232 953 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 MAGEA1P43355 309 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 MARCKSL1P49006 195 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 VAV2P52735 878 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 ABRQ12979 859 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 LAMB3Q13751 1172 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 PTCHD3Q3KNS1 767 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 HIST2H2BCQ6DN03 193 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 ZNF449Q6P9G9 518 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 ZNF517Q6ZMY9 492 aaPredicted RBP12.62□□□□□ -0.39
SF3B3-202ENST00000562722 HOOK3Q86VS8 718 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 LURAP1LQ8IV03 231 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 CNGA4Q8IV77 575 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 SYTL1Q8IYJ3 562 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 OR1L3Q8NH93 324 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 N4BP2L2Q92802 583 aaPredicted RBP12.62□□□□□ -0.39
SF3B3-202ENST00000562722 LINC00615Q96LM1 132 aaPredicted RBP12.62□□□□□ -0.39
SF3B3-202ENST00000562722 COPS8Q99627 209 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 NLNQ9BYT8 704 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 KLHL25Q9H0H3 589 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 SERTAD3Q9UJW9 196 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 AAR2Q9Y312 384 aaKnown RBP12.62□□□□□ -0.39
SF3B3-202ENST00000562722 MAP4K5Q9Y4K4 846 aa12.62□□□□□ -0.39
SF3B3-202ENST00000562722 NBPF19A0A087WUL8 3843 aa12.61□□□□□ -0.39
SF3B3-202ENST00000562722 APOC4-APOC2K7ER74 178 aa12.61□□□□□ -0.39
SF3B3-202ENST00000562722 BTN3A1O00481 513 aa12.61□□□□□ -0.39
SF3B3-202ENST00000562722 CCL22O00626 93 aa12.61□□□□□ -0.39
SF3B3-202ENST00000562722 SORBS2O94875 1100 aaKnown RBP12.61□□□□□ -0.39
SF3B3-202ENST00000562722 APOC2P02655 101 aa12.61□□□□□ -0.39
SF3B3-202ENST00000562722 ST6GAL1P15907 406 aa12.61□□□□□ -0.39
SF3B3-202ENST00000562722 PSMB4P28070 264 aa12.61□□□□□ -0.39
SF3B3-202ENST00000562722 PRDX3P30048 256 aaKnown RBP12.61□□□□□ -0.39
SF3B3-202ENST00000562722 RORAP35398 523 aa12.61□□□□□ -0.39
SF3B3-202ENST00000562722 LMAN1P49257 510 aa12.61□□□□□ -0.39
SF3B3-202ENST00000562722 PRLHRP49683 370 aa12.61□□□□□ -0.39
SF3B3-202ENST00000562722 RRADP55042 308 aa12.61□□□□□ -0.39
SF3B3-202ENST00000562722 ITGA1P56199 1179 aa12.61□□□□□ -0.39
SF3B3-202ENST00000562722 OLIG2Q13516 323 aa12.61□□□□□ -0.39
SF3B3-202ENST00000562722 RAPSNQ13702 412 aa12.61□□□□□ -0.39
SF3B3-202ENST00000562722 TCEAL1Q15170 157 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms