RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 SLC35G4P0C7Q5 338 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 POLR2CP19387 275 aaPredicted RBP11.33□□□□□ -0.6
USP3-220ENST00000561381 PTMSP20962 102 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 PTPN4P29074 926 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 CDKN1CP49918 316 aaPredicted RBP11.33□□□□□ -0.6
USP3-220ENST00000561381 ZNF140P52738 457 aaPredicted RBP11.33□□□□□ -0.6
USP3-220ENST00000561381 MLLT10P55197 1068 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 TUBB4BP68371 445 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 CHAF1BQ13112 559 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 GPS2Q13227 327 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 SEMA5AQ13591 1074 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 IL10RAQ13651 578 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 LAMB3Q13751 1172 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 TUBB2AQ13885 445 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 UBAP2LQ14157 1087 aaKnown RBP11.33□□□□□ -0.6
USP3-220ENST00000561381 SKOR2Q2VWA4 1001 aaPredicted RBP11.33□□□□□ -0.6
USP3-220ENST00000561381 ANKRD20A2Q5SQ80 823 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 ANKRD20A1Q5TYW2 823 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 ANKRD20A3Q5VUR7 823 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 CPZQ66K79 652 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 ITPRIPL1Q6GPH6 555 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 CAPRIN2Q6IMN6 1127 aaKnown RBP11.33□□□□□ -0.6
USP3-220ENST00000561381 DENND5AQ6IQ26 1287 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 LCN10Q6JVE6 187 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 CYB5D1Q6P9G0 228 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 OR4E2Q8NGC2 313 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 ZNF501Q96CX3 271 aaPredicted RBP11.33□□□□□ -0.6
USP3-220ENST00000561381 LINC00615Q96LM1 132 aaPredicted RBP11.33□□□□□ -0.6
USP3-220ENST00000561381 FCRL4Q96PJ5 515 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 TUBB2BQ9BVA1 445 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 TLR10Q9BXR5 811 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 ANKMY1Q9P2S6 941 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 CRLS1Q9UJA2 301 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 ACSL5Q9ULC5 683 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.33□□□□□ -0.6
USP3-220ENST00000561381 DUSP10Q9Y6W6 482 aa11.33□□□□□ -0.6
USP3-220ENST00000561381 CLEC18AA5D8T8 446 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 SLC9B1P1A6NJY1 282 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 AGAP14A8MT82 685 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 CPNE3O75131 537 aaKnown RBP11.32□□□□□ -0.6
USP3-220ENST00000561381 SCRG1O75711 98 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 ZBTB11O95625 1053 aaPredicted RBP11.32□□□□□ -0.6
USP3-220ENST00000561381 RECKO95980 971 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 PRSS56P0CW18 603 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 RBP3P10745 1247 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 CTNNA1P35221 906 aaKnown RBP11.32□□□□□ -0.6
USP3-220ENST00000561381 PRLHRP49683 370 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 EIF3EP60228 445 aaKnown RBP11.32□□□□□ -0.6
USP3-220ENST00000561381 ABRQ12979 859 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 SPA17Q15506 151 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 FAM69BQ5VUD6 431 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 ARMC6Q6NXE6 501 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 DARS2Q6PI48 645 aaKnown RBP11.32□□□□□ -0.6
USP3-220ENST00000561381 CLEC18BQ6UXF7 455 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 BPHLQ86WA6 291 aaPredicted RBP11.32□□□□□ -0.6
USP3-220ENST00000561381 TMEM126BQ8IUX1 230 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 APLFQ8IW19 511 aaPredicted RBP11.32□□□□□ -0.6
USP3-220ENST00000561381 NXPE1Q8N323 547 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 TEX19Q8NA77 164 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 TTC13Q8NBP0 860 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 CLEC18CQ8NCF0 446 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 ZFPM2Q8WW38 1151 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 ALG3Q92685 438 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 MR1Q95460 341 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 MIB2Q96AX9 1013 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 DCUN1D1Q96GG9 259 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 TBL1YQ9BQ87 522 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 GPR87Q9BY21 358 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 OSBPL8Q9BZF1 889 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 TRIM5Q9C035 493 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 CHST8Q9H2A9 424 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 KCND1Q9NSA2 647 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 SOHLH2Q9NX45 425 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 PCDHA3Q9Y5H8 950 aa11.32□□□□□ -0.6
USP3-220ENST00000561381 MAST4O15021 2626 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 CCDC66A2RUB6 948 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 GSAPA4D1B5 854 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 SOWAHDA6NJG2 315 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 BTN3A3O00478 584 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 LDB2O43679 373 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 CRTAMO95727 393 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 ATP1B2P14415 290 aaPredicted RBP11.31□□□□□ -0.6
USP3-220ENST00000561381 CDH3P22223 829 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 CTNNA2P26232 953 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 COPS2P61201 443 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 RPS15P62841 145 aaKnown RBP11.31□□□□□ -0.6
USP3-220ENST00000561381 KRT33BQ14525 404 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 PRPSAP1Q14558 356 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 UGT8Q16880 541 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 ZNF658BQ4V348 819 aaPredicted RBP11.31□□□□□ -0.6
USP3-220ENST00000561381 PLEKHS1Q5SXH7 462 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 SARM1Q6SZW1 724 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 ZNF517Q6ZMY9 492 aaPredicted RBP11.31□□□□□ -0.6
USP3-220ENST00000561381 SYVN1Q86TM6 617 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 CDKL3Q8IVW4 592 aaPredicted RBP11.31□□□□□ -0.6
USP3-220ENST00000561381 CCDC170Q8IYT3 715 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 PHC3Q8NDX5 983 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 HM13Q8TCT9 377 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 DNAJC1Q96KC8 554 aaKnown RBP11.31□□□□□ -0.6
USP3-220ENST00000561381 SPATA13Q96N96 652 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms