RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	CCDC89	Q8N998	374 aa		13.74	□□□□□ -0.21
TPM1-223	ENST00000560445	EXD3	Q8N9H8	876 aa		13.74	□□□□□ -0.21
TPM1-223	ENST00000560445	GPR150	Q8NGU9	434 aa		13.74	□□□□□ -0.21
TPM1-223	ENST00000560445	MAIP1	Q8WWC4	291 aa		13.74	□□□□□ -0.21
TPM1-223	ENST00000560445	LCN9	Q8WX39	176 aa		13.74	□□□□□ -0.21
TPM1-223	ENST00000560445	FAM118B	Q9BPY3	351 aa		13.74	□□□□□ -0.21
TPM1-223	ENST00000560445	TUBB2B	Q9BVA1	445 aa		13.74	□□□□□ -0.21
TPM1-223	ENST00000560445	GPR87	Q9BY21	358 aa		13.74	□□□□□ -0.21
TPM1-223	ENST00000560445	SEMA4C	Q9C0C4	833 aa		13.74	□□□□□ -0.21
TPM1-223	ENST00000560445	SRMS	Q9H3Y6	488 aa		13.74	□□□□□ -0.21
TPM1-223	ENST00000560445	IGLV3-16	A0A075B6K0	115 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	TRBV5-4	A0A0C4DH59	114 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	LOC101059948	A0A1B0GTJ6	334 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	OR6C74	A6NCV1	312 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	LIN7A	O14910	233 aa	Predicted RBP	13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	CPNE3	O75131	537 aa	Known RBP	13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	SPAG6	O75602	509 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	WT1	P19544	449 aa	Predicted RBP	13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	CYP4F2	P78329	520 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	TMPRSS15	P98073	1019 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	POU6F1	Q14863	301 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	SYTL3	Q4VX76	610 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	AARS2	Q5JTZ9	985 aa	Known RBP	13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	CERS6	Q6ZMG9	384 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	SERPINA9	Q86WD7	417 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	D2HGDH	Q8N465	521 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	GALNT6	Q8NCL4	622 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	C9orf43	Q8TAL5	461 aa	Predicted RBP	13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	PEX13	Q92968	403 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	DNAJC1	Q96KC8	554 aa	Known RBP	13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	INSM2	Q96T92	566 aa	Predicted RBP	13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	DESI2	Q9BSY9	194 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	TMEM121	Q9BTD3	319 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	COG4	Q9H9E3	785 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	LATS2	Q9NRM7	1088 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	C1GALT1	Q9NS00	363 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	FGF21	Q9NSA1	209 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	FAM8A1	Q9UBU6	413 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	ZNF148	Q9UQR1	794 aa		13.73	□□□□□ -0.21
TPM1-223	ENST00000560445	IGHV5-51	A0A0C4DH38	117 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	C2orf74	A8MZ97	194 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	DDX3Y	O15523	660 aa	Known RBP	13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	ARHGAP6	O43182	974 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	KIF1C	O43896	1103 aa	Known RBP	13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	RPN2	P04844	631 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	POLB	P06746	335 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	KLK3	P07288	261 aa	Predicted RBP	13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	OR56A5	P0C7T3	313 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	PRKAR1A	P10644	381 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	CDH3	P22223	829 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	MSN	P26038	577 aa	Known RBP	13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	RPS15	P62841	145 aa	Known RBP	13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	SH3BP2	P78314	561 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	SPARCL1	Q14515	664 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	PTPRCAP	Q14761	206 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	RPS6KA1	Q15418	735 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	CAPRIN2	Q6IMN6	1127 aa	Known RBP	13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	AFTPH	Q6ULP2	937 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	PACS1	Q6VY07	963 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	TIPARP	Q7Z3E1	657 aa	Known RBP	13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	TMEM139	Q8IV31	216 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	CDKN2AIPNL	Q96HQ2	116 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	RMDN2	Q96LZ7	410 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	FERD3L	Q96RJ6	166 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	MAP3K3	Q99759	626 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	PAK5	Q9P286	719 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	POLG2	Q9UHN1	485 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	CROT	Q9UKG9	612 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	RIMKLB	Q9ULI2	386 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	PACSIN2	Q9UNF0	486 aa	Predicted RBP	13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	POLH	Q9Y253	713 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	BTRC	Q9Y297	605 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	ZKSCAN5	Q9Y2L8	839 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	PCDHGA6	Q9Y5G7	932 aa		13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	CFAP20	Q9Y6A4	193 aa	Known RBP	13.72	□□□□□ -0.21
TPM1-223	ENST00000560445	GSAP	A4D1B5	854 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	MKRN2OS	H3BPM6	223 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	METTL18	O95568	372 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	IFNB1	P01574	187 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	HBQ1	P09105	142 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	MSL3P1	P0C860	447 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	SHMT2	P34897	504 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	KCNC4	Q03721	635 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	MSLN	Q13421	630 aa	Predicted RBP	13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	DNASE1L3	Q13609	305 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	AADACL2	Q6P093	401 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	C16orf46	Q6P387	395 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	TMEM126B	Q8IUX1	230 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	CPT1B	Q92523	772 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	ELMO2	Q96JJ3	720 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	RANBP9	Q96S59	729 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	C17orf62	Q9BQA9	187 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	TFB2M	Q9H5Q4	396 aa	Known RBP	13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	CLMP	Q9H6B4	373 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	LHX9	Q9NQ69	397 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	KCND1	Q9NSA2	647 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	HOMER3	Q9NSC5	361 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	SMARCAL1	Q9NZC9	954 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	ANAPC5	Q9UJX4	755 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	ANAPC2	Q9UJX6	822 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms