RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 BORAQ6PGQ7 559 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 PTRH1Q86Y79 214 aaKnown RBP17.27■□□□□ 0.36
HDDC3-205ENST00000559898 SLC13A5Q86YT5 568 aaPredicted RBP17.27■□□□□ 0.36
HDDC3-205ENST00000559898 SIDT2Q8NBJ9 832 aaKnown RBP17.27■□□□□ 0.36
HDDC3-205ENST00000559898 OR13J1Q8NGT2 312 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 HM13Q8TCT9 377 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 ZNF514Q96K75 400 aaPredicted RBP17.27■□□□□ 0.36
HDDC3-205ENST00000559898 KLHL25Q9H0H3 589 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 ACSL5Q9ULC5 683 aa17.27■□□□□ 0.36
HDDC3-205ENST00000559898 OR1I1O60431 355 aa17.26■□□□□ 0.35
HDDC3-205ENST00000559898 IFNB1P01574 187 aa17.26■□□□□ 0.35
HDDC3-205ENST00000559898 HADHAP40939 763 aa17.26■□□□□ 0.35
HDDC3-205ENST00000559898 PRKG2Q13237 762 aa17.26■□□□□ 0.35
HDDC3-205ENST00000559898 SEMA3AQ14563 771 aa17.26■□□□□ 0.35
HDDC3-205ENST00000559898 MEI1Q5TIA1 1274 aa17.26■□□□□ 0.35
HDDC3-205ENST00000559898 LCN10Q6JVE6 187 aa17.26■□□□□ 0.35
HDDC3-205ENST00000559898 ESX1Q8N693 406 aa17.26■□□□□ 0.35
HDDC3-205ENST00000559898 SLC38A9Q8NBW4 561 aa17.26■□□□□ 0.35
HDDC3-205ENST00000559898 CT55Q8WUE5 264 aa17.26■□□□□ 0.35
HDDC3-205ENST00000559898 STYXQ8WUJ0 223 aa17.26■□□□□ 0.35
HDDC3-205ENST00000559898 FERD3LQ96RJ6 166 aa17.26■□□□□ 0.35
HDDC3-205ENST00000559898 CCM2Q9BSQ5 444 aa17.26■□□□□ 0.35
HDDC3-205ENST00000559898 FEZ2Q9UHY8 353 aaPredicted RBP17.26■□□□□ 0.35
HDDC3-205ENST00000559898 SPENQ96T58 3664 aaKnown RBP17.26■□□□□ 0.35
HDDC3-205ENST00000559898 SNRNP200O75643 2136 aaKnown RBP17.26■□□□□ 0.35
HDDC3-205ENST00000559898 GOLGA6L3A6NEY3 463 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 TLCD2A6NGC4 264 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 K7EM74 188 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 BTN3A1O00481 513 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 TPBGLP0DKB5 382 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 PVRP15151 417 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 PSMA3P25788 255 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 MSNP26038 577 aaKnown RBP17.25■□□□□ 0.35
HDDC3-205ENST00000559898 RPS18P62269 152 aaKnown RBP17.25■□□□□ 0.35
HDDC3-205ENST00000559898 PDE1BQ01064 536 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 MAP7Q14244 749 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 ERV3-1Q14264 604 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 IL11RAQ14626 422 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 P3H1Q32P28 736 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 GPR33Q49SQ1 333 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 FAM69BQ5VUD6 431 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 OOSP2Q86WS3 158 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 PPP1R3BQ86XI6 285 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 D2HGDHQ8N465 521 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 RNF10Q8N5U6 811 aaKnown RBP17.25■□□□□ 0.35
HDDC3-205ENST00000559898 LMNTD1Q8N9Z9 388 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 LKAAEAR1Q8TD35 194 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 UBXN4Q92575 508 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 KIAA1143Q96AT1 154 aaPredicted RBP17.25■□□□□ 0.35
HDDC3-205ENST00000559898 HGH1Q9BTY7 390 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 TLR10Q9BXR5 811 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 GEMIN8Q9NWZ8 242 aaKnown RBP17.25■□□□□ 0.35
HDDC3-205ENST00000559898 SMARCAL1Q9NZC9 954 aa17.25■□□□□ 0.35
HDDC3-205ENST00000559898 PCSK5Q92824 1860 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 TLN1Q9Y490 2541 aaKnown RBP17.24■□□□□ 0.35
HDDC3-205ENST00000559898 UBA6A0AVT1 1052 aaPredicted RBP17.24■□□□□ 0.35
HDDC3-205ENST00000559898 SLC9B1P1A6NJY1 282 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 KATNA1O75449 491 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 RALBP11234 206 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 NR1D1P20393 614 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 CACNG1Q06432 222 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 ABRQ12979 859 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 KCNAB2Q13303 367 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.24■□□□□ 0.35
HDDC3-205ENST00000559898 SEL1L2Q5TEA6 688 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 ZNF534Q76KX8 674 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 LDB1Q86U70 411 aaPredicted RBP17.24■□□□□ 0.35
HDDC3-205ENST00000559898 OR52E1Q8NGJ3 308 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 OR5AR1Q8NGP9 310 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 HDAC10Q969S8 669 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 ZNF501Q96CX3 271 aaPredicted RBP17.24■□□□□ 0.35
HDDC3-205ENST00000559898 STAMBPL1Q96FJ0 436 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 LZTFL1Q9NQ48 299 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 LHX9Q9NQ69 397 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 ZNF71Q9NQZ8 489 aaPredicted RBP17.24■□□□□ 0.35
HDDC3-205ENST00000559898 FGF21Q9NSA1 209 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 RARRES3Q9UL19 164 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 ZNF148Q9UQR1 794 aa17.24■□□□□ 0.35
HDDC3-205ENST00000559898 TNRC6AQ8NDV7 1962 aaKnown RBP17.24■□□□□ 0.35
HDDC3-205ENST00000559898 C17orf113A0A1B0GUU1 675 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 CFAP99D6REC4 459 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 HCRTR1O43613 425 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 GOT2P00505 430 aaKnown RBP17.23■□□□□ 0.35
HDDC3-205ENST00000559898 ST6GAL1P15907 406 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 TCN2P20062 427 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 RPL22P35268 128 aaKnown RBP17.23■□□□□ 0.35
HDDC3-205ENST00000559898 CRADDP78560 199 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 GPS2Q13227 327 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 TRIM73Q86UV7 250 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 PPP1R2P1Q96PQ5 205 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 C19orf43Q9BQ61 176 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 FAM117AQ9C073 453 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 SLC25A18Q9H1K4 315 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 TRIT1Q9H3H1 467 aaKnown RBP17.23■□□□□ 0.35
HDDC3-205ENST00000559898 CASS4Q9NQ75 786 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 POMT2Q9UKY4 750 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 PLAGL1Q9UM63 463 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 ICKQ9UPZ9 632 aa17.23■□□□□ 0.35
HDDC3-205ENST00000559898 FER1L5A0AVI2 2057 aa17.22■□□□□ 0.35
HDDC3-205ENST00000559898 GSAPA4D1B5 854 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms