RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CEP85LQ5SZL2 805 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 TMTC4Q5T4D3 741 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 TSTD2Q5T7W7 516 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 FBXW10Q5XX13 1052 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 KCTD16Q68DU8 428 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 DENND5AQ6IQ26 1287 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 CASC4Q6P4E1 433 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 CCDC137Q6PK04 289 aaKnown RBP8.49□□□□□ -1.05
USP3-208ENST00000558285 PACS1Q6VY07 963 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 DET1Q7L5Y6 550 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 CTAGE6Q86UF2 777 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 SERPINA9Q86WD7 417 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 FAM129CQ86XR2 697 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 KMT5CQ86Y97 462 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 APLFQ8IW19 511 aaPredicted RBP8.49□□□□□ -1.05
USP3-208ENST00000558285 SLITRK4Q8IW52 837 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 CTAGE4Q8IX94 777 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 LMNTD2Q8IXW0 634 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 CFAP206Q8IYR0 622 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 RASGEF1CQ8N431 466 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 TAB3Q8N5C8 712 aaPredicted RBP8.49□□□□□ -1.05
USP3-208ENST00000558285 PHC3Q8NDX5 983 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 OR13C4Q8NGS5 318 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 OR4L1Q8NH43 312 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 CALML6Q8TD86 181 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 ZNF483Q8TF39 744 aaPredicted RBP8.49□□□□□ -1.05
USP3-208ENST00000558285 KIAA1143Q96AT1 154 aaPredicted RBP8.49□□□□□ -1.05
USP3-208ENST00000558285 SGF29Q96ES7 293 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 OSBPL9Q96SU4 736 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 RAB33BQ9H082 229 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 MVB12BQ9H7P6 319 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 FANCEQ9HB96 536 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 RDH14Q9HBH5 336 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 MRM3Q9HC36 420 aaKnown RBP8.49□□□□□ -1.05
USP3-208ENST00000558285 SLC40A1Q9NP59 571 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 CATSPERZQ9NTU4 200 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 CPSF2Q9P2I0 782 aaKnown RBP8.49□□□□□ -1.05
USP3-208ENST00000558285 POLG2Q9UHN1 485 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 ACSL6Q9UKU0 697 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 ATXN7L1Q9ULK2 861 aaPredicted RBP8.49□□□□□ -1.05
USP3-208ENST00000558285 SNX12Q9UMY4 172 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 LHX6Q9UPM6 363 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 TCAF1Q9Y4C2 921 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 PLEKHM1Q9Y4G2 1056 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 CAPN7Q9Y6W3 813 aa8.49□□□□□ -1.05
USP3-208ENST00000558285 LRP4O75096 1905 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 TRBV5-4A0A0C4DH59 114 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 IGHV5-10-1A0A0J9YXX1 117 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 STMND1H3BQB6 276 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 KLK10O43240 276 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 PHF2O75151 1096 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 NDUFS3O75489 264 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 SYF2O95926 243 aaKnown RBP8.48□□□□□ -1.05
USP3-208ENST00000558285 APOA4P06727 396 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 LIPCP11150 499 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 RPL22P35268 128 aaKnown RBP8.48□□□□□ -1.05
USP3-208ENST00000558285 CAPZBP47756 277 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 CLDN6P56747 220 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 SESN2P58004 480 aaPredicted RBP8.48□□□□□ -1.05
USP3-208ENST00000558285 XIAPP98170 497 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 ZNF648Q5T619 568 aaPredicted RBP8.48□□□□□ -1.05
USP3-208ENST00000558285 LRRC8BQ6P9F7 803 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 ZNF547Q8IVP9 402 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 ASZ1Q8WWH4 475 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 PATE1Q8WXA2 126 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 C12orf66Q96MD2 445 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 FOPNLQ96NB1 174 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 UCN2Q96RP3 112 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 TCF12Q99081 682 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 NAPGQ99747 312 aaPredicted RBP8.48□□□□□ -1.05
USP3-208ENST00000558285 GORASP1Q9BQQ3 440 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 NAT9Q9BTE0 207 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 CAPS2Q9BXY5 557 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 CCDC68Q9H2F9 335 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 ALG2Q9H553 416 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 SYTL2Q9HCH5 934 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 SLC39A1Q9NY26 324 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 EPHA6Q9UF33 1036 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 RABGEF1Q9UJ41 708 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 GNPTGQ9UJJ9 305 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 PCDHGA3Q9Y5H0 932 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 PCDHGA10Q9Y5H3 936 aa8.48□□□□□ -1.05
USP3-208ENST00000558285 PTPRBP23467 1997 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 MN1Q10571 1320 aaPredicted RBP8.47□□□□□ -1.05
USP3-208ENST00000558285 IGLV3-16A0A075B6K0 115 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 TEX51A0A1B0GUA7 166 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 UBA6A0AVT1 1052 aaPredicted RBP8.47□□□□□ -1.05
USP3-208ENST00000558285 CCDC78A2IDD5 438 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 SDR42E2A6NKP2 422 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 CDRT15L2A8MXV6 281 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 CCDC188H7C350 402 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 SNUPNO95149 360 aaKnown RBP8.47□□□□□ -1.05
USP3-208ENST00000558285 MT-ND3P03897 115 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 CD46P15529 392 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 PSMA3P25788 255 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 SLC5A2P31639 672 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 COILP38432 576 aaPredicted RBP8.47□□□□□ -1.05
USP3-208ENST00000558285 DRG2P55039 364 aaKnown RBP8.47□□□□□ -1.05
USP3-208ENST00000558285 ACY1Q03154 408 aa8.47□□□□□ -1.05
USP3-208ENST00000558285 ILF2Q12905 390 aaKnown RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms