RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 CD27P26842 260 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 MAPK3P27361 379 aaPredicted RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 TIA1P31483 386 aaKnown RBP eCLIP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 ACVRL1P37023 503 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 RPL3P39023 403 aaKnown RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 FASLGP48023 281 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 ALDH7A1P49419 539 aaKnown RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 KHKP50053 298 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 ASCL1P50553 236 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 MAPK12P53778 367 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 EVCP57679 992 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 KIAA1024LP59773 190 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 POLR2FP61218 127 aaKnown RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 POLR2LP62875 67 aaKnown RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 ARF5P84085 180 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 SLC10A2Q12908 348 aaPredicted RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 PLA2G7Q13093 441 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 MTX1Q13505 466 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 RPS6KA1Q15418 735 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 CDO1Q16878 200 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 SETMARQ53H47 684 aaPredicted RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 LRRC73Q5JTD7 316 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 TXNRD3NBQ6F5E7 133 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 CASC4Q6P4E1 433 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 SLC27A1Q6PCB7 646 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 PARM1Q6UWI2 310 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 ENPP7Q6UWV6 458 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 NHLRC1Q6VVB1 395 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 ZNF788Q6ZQV5 615 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 TMPRSS11FQ6ZWK6 438 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 ZNF367Q7RTV3 350 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 CTU1Q7Z7A3 348 aaKnown RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 GPR180Q86V85 440 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 SLC5A8Q8N695 610 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 TEX9Q8N6V9 391 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 RTL3Q8N8U3 475 aaKnown RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 PAPD5Q8NDF8 572 aaKnown RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 LPCAT1Q8NF37 534 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 LILRB1Q8NHL6 650 aaPredicted RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 PSMA8Q8TAA3 256 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 RAD54LQ92698 747 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 INPP5DQ92835 1189 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 MOB3AQ96BX8 217 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 PCYT2Q99447 389 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 FEVQ99581 238 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 PRRX2Q99811 253 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 SPXQ9BT56 116 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 QTRT1Q9BXR0 403 aaKnown RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 TRIM7Q9C029 511 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 SLA2Q9H6Q3 261 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 CATSPERBQ9H7T0 1116 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 LMAN1LQ9HAT1 526 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 HHATLQ9HCP6 504 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 NOX4Q9NPH5 578 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 KRCC1Q9NPI7 259 aaPredicted RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 KLHL1Q9NR64 748 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 PDRG1Q9NUG6 133 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 HPF1Q9NWY4 346 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 MCM9Q9NXL9 1143 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 TRPC4Q9UBN4 977 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 APPL1Q9UKG1 709 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 MTUS1Q9ULD2 1270 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 ABT1Q9ULW3 272 aaKnown RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 STX8Q9UNK0 236 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 AGTPBP1Q9UPW5 1226 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 GRIP1Q9Y3R0 1128 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 LOXL2Q9Y4K0 774 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 INSL6Q9Y581 213 aa3.05□□□□□ -1.92
TRAV28-201ENST00000557548 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.05□□□□□ -1.92
TRAV28-201ENST00000557548 ZMYM2Q9UBW7 1377 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 SPAG9O60271 1321 aaKnown RBP3.04□□□□□ -1.92
TRAV28-201ENST00000557548 TMEM272A0A1B0GTI8 110 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 SYCE3A1L190 88 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 OR2M5A3KFT3 312 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 TTI1O43156 1089 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 PPIP5K2O43314 1243 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 OR10H2O60403 315 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 RAMP2O60895 175 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 CNOT3O75175 753 aaKnown RBP3.04□□□□□ -1.92
TRAV28-201ENST00000557548 HMMRO75330 724 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 AKAP3O75969 853 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 NDUFB8O95169 186 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 PGLSO95336 258 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 LATS1O95835 1130 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 GH1P01241 217 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 PRKCGP05129 697 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 NAGAP17050 411 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 DESP17661 470 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 EPORP19235 508 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 TYMPP19971 482 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 PSMB4P28070 264 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 CCND3P30281 292 aaPredicted RBP3.04□□□□□ -1.92
TRAV28-201ENST00000557548 CTNNB1P35222 781 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 LHX1P48742 406 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 TPD52P55327 224 aaPredicted RBP3.04□□□□□ -1.92
TRAV28-201ENST00000557548 ZP1P60852 638 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 NHLH1Q02575 133 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 PRKCZQ05513 592 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 GAGE2BQ13066 116 aa3.04□□□□□ -1.92
TRAV28-201ENST00000557548 TRAF1Q13077 416 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms