RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 C16orf45Q96MC5 204 aaPredicted RBP12.19□□□□□ -0.46
SLIRP-209ENST00000557342 FERD3LQ96RJ6 166 aa12.19□□□□□ -0.46
SLIRP-209ENST00000557342 TRIM51Q9BSJ1 452 aa12.19□□□□□ -0.46
SLIRP-209ENST00000557342 KIR3DX1Q9H7L2 352 aa12.19□□□□□ -0.46
SLIRP-209ENST00000557342 MVB12BQ9H7P6 319 aa12.19□□□□□ -0.46
SLIRP-209ENST00000557342 ASCL3Q9NQ33 180 aa12.19□□□□□ -0.46
SLIRP-209ENST00000557342 INTS10Q9NVR2 710 aaKnown RBP12.19□□□□□ -0.46
SLIRP-209ENST00000557342 OGFRQ9NZT2 677 aa12.19□□□□□ -0.46
SLIRP-209ENST00000557342 TMEM9Q9P0T7 183 aa12.19□□□□□ -0.46
SLIRP-209ENST00000557342 EPHA6Q9UF33 1036 aa12.19□□□□□ -0.46
SLIRP-209ENST00000557342 PISDQ9UG56 409 aa12.19□□□□□ -0.46
SLIRP-209ENST00000557342 FAM169AQ9Y6X4 670 aa12.19□□□□□ -0.46
SLIRP-209ENST00000557342 ZCWPW2A0A1B0GU75 182 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 SLC5A10A0PJK1 596 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 SRRM3A6NNA2 597 aaPredicted RBP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 CDRT15L2A8MXV6 281 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 GOLGA8KD6RF30 607 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 H3BMM5 538 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 GOLGA8TH3BQL2 631 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 KIF2AO00139 706 aaPredicted RBP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 TOX3O15405 576 aaPredicted RBP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 RRP8O43159 456 aaKnown RBP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 SEC31AO94979 1220 aaKnown RBP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 C9P02748 559 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 APOA4P06727 396 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 ANKRD34CP0C6C1 535 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 MPSTP25325 297 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 PDHA2P29803 388 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 PREPP48147 710 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 ITGA8P53708 1063 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 ADARP55265 1226 aaKnown RBP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 ARL4CP56559 192 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 PCBP4P57723 403 aaKnown RBP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 DHX9Q08211 1270 aaKnown RBP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 SNAP47Q5SQN1 464 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 TMEM164Q5U3C3 297 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 HIBCHQ6NVY1 386 aaPredicted RBP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 DUS1LQ6P1R4 473 aaKnown RBP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 LRRC69Q6ZNQ3 347 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 ARHGAP22Q7Z5H3 698 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 CLEC14AQ86T13 490 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 OOSP2Q86WS3 158 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 CILP2Q8IUL8 1156 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 RCBTB1Q8NDN9 531 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 ZNF248Q8NDW4 579 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 TFGQ92734 400 aaPredicted RBP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 LRRC39Q96DD0 335 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 FCRL3Q96P31 734 aaPredicted RBP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 EBNA1BP2Q99848 306 aaKnown RBP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 B3GNT4Q9C0J1 378 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 P2RY12Q9H244 342 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 C20orf96Q9NUD7 363 aaPredicted RBP12.18□□□□□ -0.46
SLIRP-209ENST00000557342 SLC24A2Q9UI40 661 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 CDC23Q9UJX2 597 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 RAXQ9Y2V3 346 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 PCDHGA7Q9Y5G6 932 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 AKAP13Q12802 2813 aa12.18□□□□□ -0.46
SLIRP-209ENST00000557342 ACACBO00763 2458 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 A8MU76 341 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 CAPN5O15484 640 aaPredicted RBP12.17□□□□□ -0.46
SLIRP-209ENST00000557342 TLX3O43711 291 aaPredicted RBP12.17□□□□□ -0.46
SLIRP-209ENST00000557342 KDM1AO60341 852 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 ESR1P03372 595 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 HGFP14210 728 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 ITGB6P18564 788 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 CCR7P32248 378 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 EIF2S3P41091 472 aaKnown RBP12.17□□□□□ -0.46
SLIRP-209ENST00000557342 MAPK10P53779 464 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 EIF3BP55884 814 aaKnown RBP12.17□□□□□ -0.46
SLIRP-209ENST00000557342 C2orf54Q08AI8 447 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 BRD3Q15059 726 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 HIF1AQ16665 826 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 BBS9Q3SYG4 887 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 SPANXN3Q5MJ09 141 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 ZNF470Q6ECI4 717 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 ARMC6Q6NXE6 501 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 ZNF572Q7Z3I7 529 aaPredicted RBP12.17□□□□□ -0.46
SLIRP-209ENST00000557342 AGGF1Q8N302 714 aaeCLIP12.17□□□□□ -0.46
SLIRP-209ENST00000557342 GSDMBQ8TAX9 411 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 LPGAT1Q92604 370 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 RSC1A1Q92681 617 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 C9orf72Q96LT7 481 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 TGM7Q96PF1 710 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 CD180Q99467 661 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 TRIM56Q9BRZ2 755 aaKnown RBP12.17□□□□□ -0.46
SLIRP-209ENST00000557342 ERP44Q9BS26 406 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 FAM167BQ9BTA0 163 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 TRIM31Q9BZY9 425 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 KLHL3Q9UH77 587 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 POLG2Q9UHN1 485 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 ASF1AQ9Y294 204 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 MAP1BP46821 2468 aaKnown RBP12.17□□□□□ -0.46
SLIRP-209ENST00000557342 ADAMTS20P59510 1910 aa12.17□□□□□ -0.46
SLIRP-209ENST00000557342 TPRP12270 2363 aaKnown RBP12.16□□□□□ -0.46
SLIRP-209ENST00000557342 A0A087WV48 116 aa12.16□□□□□ -0.46
SLIRP-209ENST00000557342 PMS2P1A4D2B8 440 aa12.16□□□□□ -0.46
SLIRP-209ENST00000557342 OR5K3A6NET4 321 aa12.16□□□□□ -0.46
SLIRP-209ENST00000557342 IQCF5A8MTL0 148 aa12.16□□□□□ -0.46
SLIRP-209ENST00000557342 B4E171 279 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms