RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 VRK3Q8IV63 474 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 IFT20Q8IY31 132 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 GABPB2Q8TAK5 448 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-225ENST00000556798 JPH3Q8WXH2 748 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-225ENST00000556798 TMEM159Q96B96 161 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 FAM129AQ9BZQ8 928 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 CCDC68Q9H2F9 335 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 LRRN3Q9H3W5 708 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 LRRC4CQ9HCJ2 640 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 KCNK4Q9NYG8 393 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 ZFATQ9P243 1243 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 GALPQ9UBC7 116 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 TSR3Q9UJK0 312 aaKnown RBP17.09■□□□□ 0.33
SHMT2-225ENST00000556798 ATXN7L1Q9ULK2 861 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-225ENST00000556798 PSAT1Q9Y617 370 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 NCOR2Q9Y618 2525 aa17.09■□□□□ 0.33
SHMT2-225ENST00000556798 E5RI56 91 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 H3BMM5 538 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 AHSGP02765 367 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 APOA4P06727 396 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 CDK4P11802 303 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 MAPK9P45984 424 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 GPR3P46089 330 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 PPM1FP49593 454 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-225ENST00000556798 SPIDRQ14159 915 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 GPR18Q14330 331 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 TMED2Q15363 201 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 RBM20Q5T481 1227 aaKnown RBP17.08■□□□□ 0.32
SHMT2-225ENST00000556798 UBAP2Q5T6F2 1119 aaKnown RBP17.08■□□□□ 0.32
SHMT2-225ENST00000556798 KIAA0408Q6ZU52 694 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 C3orf62Q6ZUJ4 267 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 TMEM26Q6ZUK4 368 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 OTOAQ7RTW8 1153 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 ERMP1Q7Z2K6 904 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 PDZD3Q86UT5 571 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 GSPT2Q8IYD1 628 aaKnown RBP17.08■□□□□ 0.32
SHMT2-225ENST00000556798 AVL9Q8NBF6 648 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 ASZ1Q8WWH4 475 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 ATXN7L3BQ96GX2 97 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 AARSD1Q9BTE6 412 aaKnown RBP17.08■□□□□ 0.32
SHMT2-225ENST00000556798 SLC40A1Q9NP59 571 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 KLK13Q9UKR3 277 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 CDYLQ9Y232 598 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 MED16Q9Y2X0 877 aa17.08■□□□□ 0.32
SHMT2-225ENST00000556798 KNTC1P50748 2209 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 IGHV1OR21-1A0A087WYE8 117 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 CXorf49A8MYA2 514 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-225ENST00000556798 IFRD1O00458 451 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-225ENST00000556798 NTN3O00634 580 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-225ENST00000556798 GPC4O75487 556 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 CD151P48509 253 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 MAP9Q49MG5 647 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 CDCP2Q5VXM1 449 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 SLC22A15Q8IZD6 547 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 SIDT2Q8NBJ9 832 aaKnown RBP17.07■□□□□ 0.32
SHMT2-225ENST00000556798 PHC3Q8NDX5 983 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 GIMAP7Q8NHV1 300 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 SH3KBP1Q96B97 665 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 GFM1Q96RP9 751 aaKnown RBP17.07■□□□□ 0.32
SHMT2-225ENST00000556798 SLC30A3Q99726 388 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 ZMYND15Q9H091 742 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 RDH14Q9HBH5 336 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 NINJ2Q9NZG7 142 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 CLCA2Q9UQC9 943 aa17.07■□□□□ 0.32
SHMT2-225ENST00000556798 ANKRD12Q6UB98 2062 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 LILRA5A6NI73 299 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 D6RAR5 112 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 SLU7O95391 586 aaKnown RBP17.06■□□□□ 0.32
SHMT2-225ENST00000556798 MT-CO3P00414 261 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 C1QAP02745 245 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 GSTA2P09210 222 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 TYRP1P17643 537 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 ACADLP28330 430 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 CD1CP29017 333 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 CSF2RBP32927 897 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 CLCN7P51798 805 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 PLOD1Q02809 727 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-225ENST00000556798 KRT33BQ14525 404 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 EFTUD2Q15029 972 aaKnown RBP eCLIP17.06■□□□□ 0.324e-9■■■■■ 33.5
SHMT2-225ENST00000556798 KYNUQ16719 465 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 RBM44Q6ZP01 1051 aaKnown RBP17.06■□□□□ 0.32
SHMT2-225ENST00000556798 USP53Q70EK8 1073 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 TMPRSS7Q7RTY8 843 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 TMPRSS9Q7Z410 1059 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 STRA8Q7Z7C7 330 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 GALNT7Q86SF2 657 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 ZBTB2Q8N680 514 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 GPATCH11Q8N954 259 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 FBF1Q8TES7 1133 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 TFGQ92734 400 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-225ENST00000556798 FERD3LQ96RJ6 166 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 GPR21Q99679 349 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 NUDT22Q9BRQ3 303 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 HGH1Q9BTY7 390 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 SCNM1Q9BWG6 230 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-225ENST00000556798 CDC42EP4Q9H3Q1 356 aaKnown RBP17.06■□□□□ 0.32
SHMT2-225ENST00000556798 WASF3Q9UPY6 502 aa17.06■□□□□ 0.32
SHMT2-225ENST00000556798 RUVBL2Q9Y230 463 aaKnown RBP17.06■□□□□ 0.32
SHMT2-225ENST00000556798 KPNA5O15131 536 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms