RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 APCDD1Q8J025 514 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 CBR4Q8N4T8 237 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 FRMD1Q8N878 549 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF366Q8N895 744 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 ABHD11Q8NFV4 315 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 FIBINQ8TAL6 211 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 PNPT1Q8TCS8 783 aaKnown RBP7.56□□□□□ -1.2
LIMA1-216ENST00000552909 NTAN1Q96AB6 310 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 PPP1R36Q96LQ0 422 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 RPRD1AQ96P16 312 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-216ENST00000552909 NPAS2Q99743 824 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 SLC6A17Q9H1V8 727 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 GPN2Q9H9Y4 310 aaPredicted RBP7.56□□□□□ -1.2
LIMA1-216ENST00000552909 ZBTB26Q9HCK0 441 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 MPP6Q9NZW5 540 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 INVSQ9Y283 1065 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 TCAF1Q9Y4C2 921 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 PCDHGA2Q9Y5H1 932 aa7.56□□□□□ -1.2
LIMA1-216ENST00000552909 CEP250Q9BV73 2442 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 DOCK4Q8N1I0 1966 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 DYTNA2CJ06 578 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 HEATR9A2RTY3 570 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 SAC3D1A6NKF1 404 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 CENPBD1B2RD01 187 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 PROB1E7EW31 1015 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 H0Y626 953 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 KMOO15229 486 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 HDAC3O15379 428 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 CLOCKO15516 846 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 KCNN4O15554 427 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 GUCY1B2O75343 617 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 TIPRLO75663 272 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 KCNH1O95259 989 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 HLA-EP13747 358 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 HOXB2P14652 356 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 HOXA6P31267 233 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 ETFBP38117 255 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 CTSOP43234 321 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-216ENST00000552909 PSMD8P48556 350 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 DGKEP52429 567 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 MLLT10P55197 1068 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 IFITM2Q01629 132 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 SCAPQ12770 1279 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 CDH18Q13634 790 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 TUBA3CQ13748 450 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 NOMO1Q15155 1222 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 PTPRNQ16849 979 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 SLC36A3Q495N2 470 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 BRMS1LQ5PSV4 323 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 INTS11Q5TA45 600 aaKnown RBP7.55□□□□□ -1.2
LIMA1-216ENST00000552909 IRAK1BP1Q5VVH5 260 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 SEL1L3Q68CR1 1132 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 USP43Q70EL4 1123 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 ERMP1Q7Z2K6 904 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 BTLAQ7Z6A9 289 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 AKAP14Q86UN6 197 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 KIAA2013Q8IYS2 634 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 CAMKK1Q8N5S9 505 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 SNX31Q8N9S9 440 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 SUMF1Q8NBK3 374 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 MCUQ8NE86 351 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 TSTD1Q8NFU3 115 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 LRRN4Q8WUT4 740 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 CYGBQ8WWM9 190 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 RLN3Q8WXF3 142 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 S100ZQ8WXG8 99 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 LPGAT1Q92604 370 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 CDKL2Q92772 493 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 NRBF2Q96F24 287 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 FEM1CQ96JP0 617 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 FAM126AQ9BYI3 521 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-216ENST00000552909 ILKAPQ9H0C8 392 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF385DQ9H6B1 395 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 PKD2L2Q9NZM6 624 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 THAP10Q9P2Z0 257 aaPredicted RBP7.55□□□□□ -1.2
LIMA1-216ENST00000552909 PRELID1Q9Y255 219 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 MFHAS1Q9Y4C4 1052 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 STON1Q9Y6Q2 735 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 NUMA1Q14980 2115 aa7.55□□□□□ -1.2
LIMA1-216ENST00000552909 KNL1Q8NG31 2342 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 TCRBV21S2A2A0A5A6 115 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 ILVBLA1L0T0 632 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF487B1APH4 448 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 NUAK1O60285 661 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 H2AFYO75367 372 aaKnown RBP7.54□□□□□ -1.2
LIMA1-216ENST00000552909 SEC14L2O76054 403 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 APBB3O95704 486 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 TYK2P29597 1187 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 SERPINB1P30740 379 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 MAGEA6P43360 314 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 HLCSP50747 726 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 HK2P52789 917 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 RAD23AP54725 363 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 TPI1P60174 286 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 GBE1Q04446 702 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 DNASE1L3Q13609 305 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 ENPP2Q13822 863 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 INAVAQ3KP66 663 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 EOGTQ5NDL2 527 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 NXNQ6DKJ4 435 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms