RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 BCAS2O75934 225 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ZNF682O95780 498 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 TSPAN12O95859 305 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 IL10P22301 178 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 PTGER3P43115 390 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ATP6V0D1P61421 351 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 SNRPD1P62314 119 aaKnown RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 NAE1Q13564 534 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 RAB33AQ14088 237 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 MYLK3Q32MK0 819 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 CYP27C1Q4G0S4 372 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 PABPC1LQ4VXU2 614 aaKnown RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 LRRC23Q53EV4 343 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 AAGABQ6PD74 315 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 USP34Q70CQ2 3546 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 GANCQ8TET4 914 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ITCHQ96J02 903 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 CDK5RAP1Q96SZ6 601 aaKnown RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 CCT7Q99832 543 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 DCUN1D5Q9BTE7 237 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ELOVL6Q9H5J4 265 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 PRPF19Q9UMS4 504 aaKnown RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ARIH1Q9Y4X5 557 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 BACE2Q9Y5Z0 518 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ALPK2Q86TB3 2170 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 RFXAPO00287 272 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ARPC2O15144 300 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 E2F6O75461 281 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ESRRBO95718 433 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 RHOP08100 348 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 SLC6A2P23975 617 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 TACR1P25103 407 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 CCR7P32248 378 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 HMGCLP35914 325 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 SPAM1P38567 509 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 BDKRB1P46663 353 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 SLC6A11P48066 632 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 PRKCQQ04759 706 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 PIGFQ07326 219 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 GRIN2CQ14957 1233 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 PTCHD3Q3KNS1 767 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 MPPE1Q53F39 396 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 AARS2Q5JTZ9 985 aaKnown RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 GPRC6AQ5T6X5 926 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 GLYATQ6IB77 296 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 CYP20A1Q6UW02 462 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 SUSD1Q6UWL2 747 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 RBM44Q6ZP01 1051 aaKnown RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 CHSY3Q70JA7 882 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 SZRD1Q7Z422 152 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 TRAPPC5Q8IUR0 188 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 RBFAQ8N0V3 343 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 GATA6Q92908 595 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ZNF599Q96NL3 588 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 EFHD1Q9BUP0 239 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM106CQ9BVX2 250 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ARMC7Q9H6L4 198 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 RIC8BQ9NVN3 520 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 INTS10Q9NVR2 710 aaKnown RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 GID8Q9NWU2 228 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 BCAP29Q9UHQ4 241 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 SLC25A13Q9UJS0 675 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 OAZ3Q9UMX2 235 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 RPL26L1Q9UNX3 145 aaKnown RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 TDRKHQ9Y2W6 561 aaKnown RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 DHRS7Q9Y394 339 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 DOCK4Q8N1I0 1966 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 RALGAPA2Q2PPJ7 1873 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 TRBV23OR9-2A0A075B6M9 112 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 A6NHS1 94 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 AGRPO00253 132 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ACOT8O14734 319 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 TAPBPO15533 448 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 B4GAT1O43505 415 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 STK16O75716 305 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ZNF189O75820 626 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ZBTB11O95625 1053 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 CLPTM1O96005 669 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ESR1P03372 595 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ADH1AP07327 375 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 UROSP10746 265 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 PABPC1P11940 636 aaKnown RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 COL6A1P12109 1028 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 EPB42P16452 691 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 LAG3P18627 525 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 POLR2EP19388 210 aaKnown RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 DGKAP23743 735 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 GSTT1P30711 240 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 PTGER1P34995 402 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 NNMTP40261 264 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 CLCN7P51798 805 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 CHN2P52757 468 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 LAMB3Q13751 1172 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 SYTL3Q4VX76 610 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 TPGS2Q68CL5 300 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 FAM109BQ6ICB4 259 aaPredicted RBP5.49□□□□□ -1.53
LIMA1-215ENST00000552823 OR52E8Q6IFG1 317 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 NANOGP8Q6NSW7 305 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 C22orf39Q6P5X5 142 aa5.49□□□□□ -1.53
LIMA1-215ENST00000552823 ZNF621Q6ZSS3 439 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms