RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 H3BNC9 293 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 LSM1O15116 133 aaKnown RBP14.79□□□□□ -0.04
USP28-214ENST00000545540 FFAR2O15552 330 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 SEPT4O43236 478 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 PRR35P0CG20 571 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 CASP9P55211 416 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 EMX2Q04743 252 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 CHRNB3Q05901 458 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 FAM117BQ6P1L5 589 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 RBM23Q86U06 439 aaKnown RBP14.79□□□□□ -0.04
USP28-214ENST00000545540 OR2T12Q8NG77 320 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 PNPT1Q8TCS8 783 aaKnown RBP14.79□□□□□ -0.04
USP28-214ENST00000545540 SNX19Q92543 992 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 EGLN2Q96KS0 407 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 CSF3RQ99062 836 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 CLDN7O95471 211 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 CD160O95971 181 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 ALDH2P05091 517 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 C16orf87Q6PH81 154 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 FAM162AQ96A26 154 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 FUBP3Q96I24 572 aaKnown RBP eCLIP14.79□□□□□ -0.04
USP28-214ENST00000545540 HIPK3Q9H422 1215 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 ASB8Q9H765 288 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 NMRK2Q9NPI5 230 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 RIC8BQ9NVN3 520 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 MBD1Q9UIS9 605 aaPredicted RBP14.79□□□□□ -0.04
USP28-214ENST00000545540 PIKFYVEQ9Y2I7 2098 aa14.79□□□□□ -0.04
USP28-214ENST00000545540 PRAMEF1O95521 474 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 CLCN7P51798 805 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 SH3BGRP55822 239 aaPredicted RBP14.78□□□□□ -0.04
USP28-214ENST00000545540 PLD1Q13393 1074 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 SIM2Q14190 667 aaPredicted RBP14.78□□□□□ -0.04
USP28-214ENST00000545540 GALNT18Q6P9A2 607 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 SBSNQ6UWP8 590 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 SAPCD2Q86UD0 394 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 SERPINA9Q86WD7 417 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 TNIP2Q8NFZ5 429 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 CNIH3Q8TBE1 160 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 SLC22A17Q8WUG5 538 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 GLT1D1Q96MS3 346 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 PFDN4Q9NQP4 134 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 DNMT3LQ9UJW3 386 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 LOC730098B7Z3J9 87 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 G3V2T6 193 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 TAPBPO15533 448 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 EPOP01588 193 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 SLC11A2P49281 568 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 BMXP51813 675 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 RHOAP61586 193 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 CD300CQ08708 224 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 TAF12Q16514 161 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 FUT10Q6P4F1 479 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 SUSD1Q6UWL2 747 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 GALNT7Q86SF2 657 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 FNDC8Q8TC99 324 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 AMBRA1Q9C0C7 1298 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 SLC25A37Q9NYZ2 338 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 WWOXQ9NZC7 414 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 FBXO10Q9UK96 956 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 ZBBXA8MT70 800 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 MTX2O75431 263 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 CAPN15O75808 1086 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 IGLV3-27P01718 113 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 THRBP10828 461 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 PFKLP17858 780 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 MAPKAPK2P49137 400 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 TTPAP49638 278 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 NUP107P57740 925 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 MAPKAPK3Q16644 382 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 CTU2Q2VPK5 515 aaKnown RBP14.78□□□□□ -0.04
USP28-214ENST00000545540 PGS1Q32NB8 556 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 SULT1C3Q6IMI6 304 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 TSPAN33Q86UF1 283 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 ZDHHC13Q8IUH4 622 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 TBC1D15Q8TC07 691 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 SOCS4Q8WXH5 440 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 AUTS2Q8WXX7 1259 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 INPP5KQ9BT40 448 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 MARCH5Q9NX47 278 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 ZNF490Q9ULM2 529 aaPredicted RBP14.78□□□□□ -0.04
USP28-214ENST00000545540 PCDHB3Q9Y5E6 796 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 CASP8AP2Q9UKL3 1982 aa14.78□□□□□ -0.04
USP28-214ENST00000545540 VWA8A3KMH1 1905 aa14.77□□□□□ -0.04
USP28-214ENST00000545540 TBL1XO60907 577 aa14.77□□□□□ -0.04
USP28-214ENST00000545540 GMNNO75496 209 aa14.77□□□□□ -0.04
USP28-214ENST00000545540 ADARB1P78563 741 aaKnown RBP14.77□□□□□ -0.04
USP28-214ENST00000545540 ITGADQ13349 1161 aa14.77□□□□□ -0.04
USP28-214ENST00000545540 DGCR6Q14129 220 aa14.77□□□□□ -0.04
USP28-214ENST00000545540 SLC15A4Q8N697 577 aa14.77□□□□□ -0.04
USP28-214ENST00000545540 UBE2FQ969M7 185 aa14.77□□□□□ -0.04
USP28-214ENST00000545540 BRINP2Q9C0B6 783 aa14.77□□□□□ -0.04
USP28-214ENST00000545540 MRGBPQ9NV56 204 aa14.77□□□□□ -0.04
USP28-214ENST00000545540 FNDC1Q4ZHG4 1894 aaPredicted RBP14.77□□□□□ -0.05
USP28-214ENST00000545540 STC2O76061 302 aa14.77□□□□□ -0.05
USP28-214ENST00000545540 ANXA6P08133 673 aa14.77□□□□□ -0.05
USP28-214ENST00000545540 ENO2P09104 434 aaPredicted RBP14.77□□□□□ -0.05
USP28-214ENST00000545540 CR2P20023 1033 aa14.77□□□□□ -0.05
USP28-214ENST00000545540 TACR1P25103 407 aa14.77□□□□□ -0.05
USP28-214ENST00000545540 GTF2H3Q13889 308 aa14.77□□□□□ -0.05
USP28-214ENST00000545540 TPGS1Q6ZTW0 290 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms