RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ZNF789Q5FWF6 425 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 TTI2Q6NXR4 508 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 MRPL14Q6P1L8 145 aaKnown RBP8.86□□□□□ -0.99
USP28-205ENST00000537706 GHDCQ8N2G8 530 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 PYROXD2Q8N2H3 581 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 FKBP10Q96AY3 582 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 DMRTA2Q96SC8 542 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 SPATA16Q9BXB7 569 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 NOD2Q9HC29 1040 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 RTN4Q9NQC3 1192 aaKnown RBP8.86□□□□□ -0.99
USP28-205ENST00000537706 RRAGDQ9NQL2 400 aaPredicted RBP8.86□□□□□ -0.99
USP28-205ENST00000537706 NPDC1Q9NQX5 325 aaPredicted RBP8.86□□□□□ -0.99
USP28-205ENST00000537706 ZNF358Q9NW07 568 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 PTGFRNQ9P2B2 879 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 NXT1Q9UKK6 140 aaKnown RBP8.86□□□□□ -0.99
USP28-205ENST00000537706 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.86□□□□□ -0.99
USP28-205ENST00000537706 ADGRG1Q9Y653 693 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 ABCA4P78363 2273 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 A0A0J9YYE9 177 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 FADS2P1A8MWK0 482 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 INAFM1C9JVW0 142 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 MAP2K7O14733 419 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 TTI1O43156 1089 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 LSM8O95777 96 aaKnown RBP8.86□□□□□ -0.99
USP28-205ENST00000537706 TRBC1P01850 177 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 HLA-DPA1P20036 260 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 NDUFS1P28331 727 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 PRCPP42785 496 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 CTSCP53634 463 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 KRT33BQ14525 404 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 SYCP1Q15431 976 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 PPP1R15BQ5SWA1 713 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 HENMT1Q5T8I9 393 aaKnown RBP8.86□□□□□ -0.99
USP28-205ENST00000537706 PODNL1Q6PEZ8 512 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 FBXO38Q6PIJ6 1188 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 PAMR1Q6UXH9 720 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 NCCRP1Q6ZVX7 275 aaPredicted RBP8.86□□□□□ -0.99
USP28-205ENST00000537706 ADGRG6Q86SQ4 1221 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 FAM98AQ8NCA5 519 aaKnown RBP8.86□□□□□ -0.99
USP28-205ENST00000537706 LILRB4Q8NHJ6 448 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 PIH1D2Q8WWB5 315 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 DLG3Q92796 817 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 MAGEB5Q9BZ81 275 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 LIME1Q9H400 295 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 IMP3Q9NV31 184 aaKnown RBP8.86□□□□□ -0.99
USP28-205ENST00000537706 HAUS2Q9NVX0 235 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 LRFN1Q9P244 771 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 POMT2Q9UKY4 750 aa8.86□□□□□ -0.99
USP28-205ENST00000537706 TTC24A2A3L6 582 aaPredicted RBP8.85□□□□□ -0.99
USP28-205ENST00000537706 ANKRD62A6NC57 917 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 NKX2-6A6NCS4 301 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 CDK14O94921 469 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 CLDN7O95471 211 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 GNA14O95837 355 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 POLR2CP19387 275 aaPredicted RBP8.85□□□□□ -0.99
USP28-205ENST00000537706 IL4RP24394 825 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 PEX19P40855 299 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 SPINT3P49223 89 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 LMAN1P49257 510 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 RAB6CQ53S08 254 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 COBLL1Q53SF7 1204 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 FBXW10Q5XX13 1052 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 PDPK2PQ6A1A2 396 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 TLDC1Q6P9B6 456 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 SASS6Q6UVJ0 657 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 C16orf47Q6ZP98 133 aaPredicted RBP8.85□□□□□ -0.99
USP28-205ENST00000537706 CEP128Q6ZU80 1094 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 TRAPPC5Q8IUR0 188 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 FMR1NBQ8N0W7 255 aaPredicted RBP8.85□□□□□ -0.99
USP28-205ENST00000537706 GPR150Q8NGU9 434 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 GPATCH1Q9BRR8 931 aaKnown RBP8.85□□□□□ -0.99
USP28-205ENST00000537706 ZSCAN5AQ9BUG6 496 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 BDH2Q9BUT1 245 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 RAB6CQ9H0N0 254 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 WDR54Q9H977 334 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 ARFGAP3Q9NP61 516 aa8.85□□□□□ -0.99
USP28-205ENST00000537706 NCOA6Q14686 2063 aaPredicted RBP8.85□□□□□ -0.99
USP28-205ENST00000537706 C1orf232A0A0U1RR37 186 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 A0A1B0GVL5 298 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 NPIPA5E9PKD4 350 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 PSMA7O14818 248 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 ALBP02768 609 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 MTHFD1P11586 935 aaKnown RBP8.84□□□□□ -0.99
USP28-205ENST00000537706 CMA1P23946 247 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 HOXC12P31275 282 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 CARSP49589 748 aaKnown RBP8.84□□□□□ -0.99
USP28-205ENST00000537706 NKX6-1P78426 367 aaPredicted RBP8.84□□□□□ -0.99
USP28-205ENST00000537706 PTPRRQ15256 657 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 STX1AQ16623 288 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 ANKRD20A8PQ5CZ79 823 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 ABHD17BQ5VST6 288 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 HMBOX1Q6NT76 420 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 KIRREL2Q6UWL6 708 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 BEND7Q8N7W2 519 aaPredicted RBP8.84□□□□□ -0.99
USP28-205ENST00000537706 SLC20A1Q8WUM9 679 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 CENPIQ92674 756 aaPredicted RBP8.84□□□□□ -0.99
USP28-205ENST00000537706 RND1Q92730 232 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 TTC25Q96NG3 672 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 MGME1Q9BQP7 344 aa8.84□□□□□ -0.99
USP28-205ENST00000537706 RASSF1Q9NS23 344 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms