RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 CYP1B1Q16678 543 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 LYPLAL1Q5VWZ2 237 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 KLHL35Q6PF15 583 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 PCSK4Q6UW60 755 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 CERS6Q6ZMG9 384 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 NKD1Q969G9 470 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 PDLIM2Q96JY6 352 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 OSBPL9Q96SU4 736 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 ZPBPQ9BS86 351 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 IL22Q9GZX6 179 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 TREX1Q9NSU2 369 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 PILRAQ9UKJ1 303 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 HEBP2Q9Y5Z4 205 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 COLEC10Q9Y6Z7 277 aa14.42□□□□□ -0.1
USP28-204ENST00000537642 IGHV5-51A0A0C4DH38 117 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 PGRMC1O00264 195 aaKnown RBP14.41□□□□□ -0.1
USP28-204ENST00000537642 QSOX1O00391 747 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 IFRD1O00458 451 aaPredicted RBP14.41□□□□□ -0.1
USP28-204ENST00000537642 POLR1CO15160 346 aaPredicted RBP14.41□□□□□ -0.1
USP28-204ENST00000537642 ATXN7O15265 892 aaPredicted RBP14.41□□□□□ -0.1
USP28-204ENST00000537642 KRT14P02533 472 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 MGAT1P26572 445 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 NDUFS1P28331 727 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 NMBRP28336 390 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 COILP38432 576 aaPredicted RBP14.41□□□□□ -0.1
USP28-204ENST00000537642 MAGEA6P43360 314 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 CD151P48509 253 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 TERF1P54274 439 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 GPS1Q13098 491 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 KRT33BQ14525 404 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 FASTKD1Q53R41 847 aaKnown RBP14.41□□□□□ -0.1
USP28-204ENST00000537642 KIAA1614Q5VZ46 1190 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 LRRC8BQ6P9F7 803 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 PHC3Q8NDX5 983 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 ELMO1Q92556 727 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 FERD3LQ96RJ6 166 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 TTC1Q99614 292 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 MAP3K3Q99759 626 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 HRASLS2Q9NWW9 162 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 SYBUQ9NX95 663 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 BFARQ9NZS9 450 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 MARCH4Q9P2E8 410 aaPredicted RBP14.41□□□□□ -0.1
USP28-204ENST00000537642 NEU2Q9Y3R4 380 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 ATMQ13315 3056 aa14.41□□□□□ -0.1
USP28-204ENST00000537642 OR6C74A6NCV1 312 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 USP27XA6NNY8 438 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 AP3B1O00203 1094 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 LIN7AO14910 233 aaPredicted RBP14.4□□□□□ -0.1
USP28-204ENST00000537642 KIF5CO60282 957 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 RAD1O60671 282 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 FTH1P02794 183 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 OR56A5P0C7T3 313 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 NELFEP18615 380 aaKnown RBP14.4□□□□□ -0.1
USP28-204ENST00000537642 ARCN1P48444 511 aaKnown RBP14.4□□□□□ -0.1
USP28-204ENST00000537642 ATP1A2P50993 1020 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 RHDQ02161 417 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 FOXM1Q08050 763 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 BRD3Q15059 726 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 DNTTIP2Q5QJE6 756 aaKnown RBP14.4□□□□□ -0.1
USP28-204ENST00000537642 ANKRD22Q5VYY1 191 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 ZNF449Q6P9G9 518 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 CCDC137Q6PK04 289 aaKnown RBP14.4□□□□□ -0.1
USP28-204ENST00000537642 NAPRTQ6XQN6 538 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 TIPARPQ7Z3E1 657 aaKnown RBP14.4□□□□□ -0.1
USP28-204ENST00000537642 LDB1Q86U70 411 aaPredicted RBP14.4□□□□□ -0.1
USP28-204ENST00000537642 OOSP2Q86WS3 158 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 CACNA2D3Q8IZS8 1091 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 ACVR1CQ8NER5 493 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 OR4E2Q8NGC2 313 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 ACTRT1Q8TDG2 376 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 UBXN4Q92575 508 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 TTC9Q92623 222 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 TFGQ92734 400 aaPredicted RBP14.4□□□□□ -0.1
USP28-204ENST00000537642 SLC41A2Q96JW4 573 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 OR6C1Q96RD1 312 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 NAP1L3Q99457 506 aaPredicted RBP14.4□□□□□ -0.1
USP28-204ENST00000537642 NRTNQ99748 197 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 KIFC1Q9BW19 673 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 MRM3Q9HC36 420 aaKnown RBP14.4□□□□□ -0.1
USP28-204ENST00000537642 CATSPERZQ9NTU4 200 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 SNX12Q9UMY4 172 aa14.4□□□□□ -0.1
USP28-204ENST00000537642 TMEM184BQ9Y519 407 aaPredicted RBP14.4□□□□□ -0.1
USP28-204ENST00000537642 SLC5A10A0PJK1 596 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 TLCD2A6NGC4 264 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 ERVH48-1M5A8F1 160 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 CES2O00748 559 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 ZNF185O15231 689 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 CD3EAPO15446 510 aaKnown RBP14.39□□□□□ -0.11
USP28-204ENST00000537642 AVILO75366 819 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 STK17BO94768 372 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 DLGAP3O95886 979 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 ZNF28P17035 718 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 ITGB6P18564 788 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 POLR2CP19387 275 aaPredicted RBP14.39□□□□□ -0.11
USP28-204ENST00000537642 ARNTP27540 789 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 ACADLP28330 430 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 KPNA2P52292 529 aaKnown RBP14.39□□□□□ -0.11
USP28-204ENST00000537642 BOP1Q14137 746 aaKnown RBP14.39□□□□□ -0.11
USP28-204ENST00000537642 KCNAB1Q14722 419 aa14.39□□□□□ -0.11
USP28-204ENST00000537642 CES3Q6UWW8 571 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms