RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 UGT1A4P22310 534 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 RPS3P23396 243 aaKnown RBP eCLIP12.93□□□□□ -0.341e-7■■□□□ 12
LDLR-203ENST00000535915 DGKAP23743 735 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 UGT1A3P35503 534 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 UGT1A5P35504 534 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 GDF5P43026 501 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 PIK3CGP48736 1102 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 SELPLGQ14242 412 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 PLA2G4EQ3MJ16 856 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 KCTD21Q4G0X4 260 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 TPGS2Q68CL5 300 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 LPCAT2Q7L5N7 544 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 DEFB128Q7Z7B8 93 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 ARL14EPQ8N8R7 260 aaPredicted RBP12.93□□□□□ -0.34
LDLR-203ENST00000535915 ALG14Q96F25 216 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 FBXL20Q96IG2 436 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 WWOXQ9NZC7 414 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 HSFX1Q9UBD0 423 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 MAGEL2Q9UJ55 1249 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 PTBP2Q9UKA9 531 aaKnown RBP12.93□□□□□ -0.34
LDLR-203ENST00000535915 OARD1Q9Y530 152 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 GRXCR2A6NFK2 248 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 CLOCKO15516 846 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 TRMUO75648 421 aaKnown RBP12.93□□□□□ -0.34
LDLR-203ENST00000535915 BMP10O95393 424 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 GLUD1P00367 558 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 TRBC1P01850 177 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 C7P10643 843 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 RPS9P46781 194 aaKnown RBP12.93□□□□□ -0.34
LDLR-203ENST00000535915 PPP3CCP48454 512 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 NOGQ13253 232 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 RETSATQ6NUM9 610 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.93□□□□□ -0.349e-8■■■■□ 21.8
LDLR-203ENST00000535915 TMEM150AQ86TG1 271 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 RNF168Q8IYW5 571 aaPredicted RBP12.93□□□□□ -0.34
LDLR-203ENST00000535915 ALDH16A1Q8IZ83 802 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 OFCC1Q8IZS5 231 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 DHRSXQ8N5I4 330 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 OSCP1Q8WVF1 389 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 PPP3R2Q96LZ3 170 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 CGREF1Q99674 301 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 C2orf49Q9BVC5 232 aaPredicted RBP12.93□□□□□ -0.34
LDLR-203ENST00000535915 CHID1Q9BWS9 393 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 IL26Q9NPH9 171 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 SMPD3Q9NY59 655 aaPredicted RBP12.93□□□□□ -0.34
LDLR-203ENST00000535915 OPTCQ9UBM4 332 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 CRLS1Q9UJA2 301 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 PCDHB3Q9Y5E6 796 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 FADS3Q9Y5Q0 445 aa12.93□□□□□ -0.34
LDLR-203ENST00000535915 A0A087WXM4 84 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 ARNTLO00327 626 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 ANKRD28O15084 1053 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 VARSP26640 1264 aaKnown RBP12.92□□□□□ -0.34
LDLR-203ENST00000535915 HNF1BP35680 557 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 MAGEA10P43363 369 aaPredicted RBP12.92□□□□□ -0.34
LDLR-203ENST00000535915 ZXDBP98169 803 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 PWP1Q13610 501 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 PHKG1Q16816 387 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 TXNDC8Q6A555 127 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 PRR23BQ6ZRT6 265 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 ZBTB2Q8N680 514 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 BDH2Q9BUT1 245 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 DNMT3BQ9UBC3 853 aaKnown RBP12.92□□□□□ -0.34
LDLR-203ENST00000535915 GLYATL1P3A0A0U1RQE8 302 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 IFRD1O00458 451 aaPredicted RBP12.92□□□□□ -0.34
LDLR-203ENST00000535915 RGS14O43566 566 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 LATS1O95835 1130 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 SOD2P04179 222 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 JAK1P23458 1154 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 ACRV1P26436 265 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 ESRRGP62508 458 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 PTGR1Q14914 329 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 FXNQ16595 210 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 PYCR3Q53H96 274 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 DTWD1Q8N5C7 304 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 ADAMTS19Q8TE59 1207 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 HHIPL1Q96JK4 782 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 CD244Q9BZW8 370 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 CD320Q9NPF0 282 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 EIF3LQ9Y262 564 aaKnown RBP12.92□□□□□ -0.34
LDLR-203ENST00000535915 CPQQ9Y646 472 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 GMEB1Q9Y692 573 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.92□□□□□ -0.34
LDLR-203ENST00000535915 KCNH1O95259 989 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 CDH1P12830 882 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 BPIP17213 487 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 MSH3P20585 1137 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 NFKBIAP25963 317 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 CAPGP40121 348 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 CDK9P50750 372 aaKnown RBP12.92□□□□□ -0.34
LDLR-203ENST00000535915 ZBTB18Q99592 522 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 TNKS2Q9H2K2 1166 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 LATS2Q9NRM7 1088 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 FARSBQ9NSD9 589 aaKnown RBP12.92□□□□□ -0.34
LDLR-203ENST00000535915 TUBA8Q9NY65 449 aaPredicted RBP12.92□□□□□ -0.34
LDLR-203ENST00000535915 KLQ9UEF7 1012 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 ZNF510Q9Y2H8 683 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 DENND4CQ5VZ89 1909 aa12.92□□□□□ -0.34
LDLR-203ENST00000535915 PLXNB3Q9ULL4 1909 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 GMNNO75496 209 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms