RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SLC5A10A0PJK1 596 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 PMS2P1A4D2B8 440 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 FAM187AA6NFU0 413 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 GOLGA8KD6RF30 607 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 GOLGA8TH3BQL2 631 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 TAF4O00268 1085 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 IFRD1O00458 451 aaPredicted RBP14.68□□□□□ -0.06
CPSF1-208ENST00000532560 TP73O15350 636 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 NDUFS3O75489 264 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 TTC4O95801 387 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 C9P02748 559 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 ITGA2BP08514 1039 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 PDHA2P29803 388 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 PREPP48147 710 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 PPM1FP49593 454 aaPredicted RBP14.68□□□□□ -0.06
CPSF1-208ENST00000532560 ITGA8P53708 1063 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 ADARP55265 1226 aaKnown RBP14.68□□□□□ -0.06
CPSF1-208ENST00000532560 ERVPABLB-1P60509 514 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 CKAP4Q07065 602 aaKnown RBP14.68□□□□□ -0.06
CPSF1-208ENST00000532560 DHX9Q08211 1270 aaKnown RBP14.68□□□□□ -0.06
CPSF1-208ENST00000532560 C2orf54Q08AI8 447 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 BOP1Q14137 746 aaKnown RBP14.68□□□□□ -0.06
CPSF1-208ENST00000532560 C16orf72Q14CZ0 275 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 LONRF1Q17RB8 773 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 TBC1D25Q3MII6 688 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 SYTL3Q4VX76 610 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 DUS1LQ6P1R4 473 aaKnown RBP14.68□□□□□ -0.06
CPSF1-208ENST00000532560 MAATS1Q7Z4T9 603 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 PLXDC1Q8IUK5 500 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 CILP2Q8IUL8 1156 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 PDIK1LQ8N165 341 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 FBXO39Q8N4B4 442 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 CEP112Q8N8E3 955 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 NCSTNQ92542 709 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 LPGAT1Q92604 370 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 ZNF578Q96N58 590 aaPredicted RBP14.68□□□□□ -0.06
CPSF1-208ENST00000532560 NAT9Q9BTE0 207 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 KIR3DX1Q9H7L2 352 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 CDC23Q9UJX2 597 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 VPS9D1Q9Y2B5 631 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 COLEC10Q9Y6Z7 277 aa14.68□□□□□ -0.06
CPSF1-208ENST00000532560 KMT2BQ9UMN6 2715 aaPredicted RBP14.68□□□□□ -0.06
CPSF1-208ENST00000532560 APC2O95996 2303 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 CDRT15L2A8MXV6 281 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 RAD51CO43502 376 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 AMD1P17707 334 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 RBMS1P29558 406 aaKnown RBP14.67□□□□□ -0.06
CPSF1-208ENST00000532560 RPL21P46778 160 aaKnown RBP14.67□□□□□ -0.06
CPSF1-208ENST00000532560 CRYMQ14894 314 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 HIF1AQ16665 826 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 BBS9Q3SYG4 887 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 MSS51Q4VC12 460 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 ZNF470Q6ECI4 717 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 PTRHD1Q6GMV3 140 aaKnown RBP14.67□□□□□ -0.06
CPSF1-208ENST00000532560 KLHL35Q6PF15 583 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 CENPUQ71F23 418 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 CLEC14AQ86T13 490 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 LMNTD2Q8IXW0 634 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.67□□□□□ -0.06
CPSF1-208ENST00000532560 BBOF1Q8ND07 529 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 RCBTB1Q8NDN9 531 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 SNIP1Q8TAD8 396 aaKnown RBP14.67□□□□□ -0.06
CPSF1-208ENST00000532560 LKAAEAR1Q8TD35 194 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 RSC1A1Q92681 617 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 LRRC39Q96DD0 335 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 SLC46A1Q96NT5 459 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 PANX3Q96QZ0 392 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 EBNA1BP2Q99848 306 aaKnown RBP14.67□□□□□ -0.06
CPSF1-208ENST00000532560 TRIM31Q9BZY9 425 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 RAB33BQ9H082 229 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 MVB12BQ9H7P6 319 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 THSD1Q9NS62 852 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 INTS10Q9NVR2 710 aaKnown RBP14.67□□□□□ -0.06
CPSF1-208ENST00000532560 IL1RAPL1Q9NZN1 696 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 AKAP7Q9P0M2 348 aaPredicted RBP14.67□□□□□ -0.06
CPSF1-208ENST00000532560 EPHA6Q9UF33 1036 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 SLC24A2Q9UI40 661 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 FAM169AQ9Y6X4 670 aa14.67□□□□□ -0.06
CPSF1-208ENST00000532560 ASPMQ8IZT6 3477 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 UBA6A0AVT1 1052 aaPredicted RBP14.66□□□□□ -0.06
CPSF1-208ENST00000532560 H3BMM5 538 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 BANF1O75531 89 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 TNFSF15O95150 251 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 ESR1P03372 595 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 ANKRD34CP0C6C1 535 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 JMJD7P0C870 316 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 HGFP14210 728 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 TYRP1P17643 537 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 MPSTP25325 297 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 AOAHP28039 575 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 ACADLP28330 430 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 CCR7P32248 378 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 GFERP55789 205 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 EIF3BP55884 814 aaKnown RBP14.66□□□□□ -0.06
CPSF1-208ENST00000532560 ARL4CP56559 192 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 GABPB1Q06547 395 aaPredicted RBP14.66□□□□□ -0.06
CPSF1-208ENST00000532560 THOC5Q13769 683 aaKnown RBP14.66□□□□□ -0.06
CPSF1-208ENST00000532560 PLCL1Q15111 1095 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 TMED2Q15363 201 aa14.66□□□□□ -0.06
CPSF1-208ENST00000532560 WHAMMP3Q1A5X7 153 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms