RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 EXD1Q8NHP7 514 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 ARRDC2Q8TBH0 407 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 ADAMTS14Q8WXS8 1223 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.23□□□□□ -1.89
CD44-229ENST00000528672 ROBO4Q8WZ75 1007 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 SMG7Q92540 1137 aaKnown RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 EXT2Q93063 718 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 ERLEC1Q96DZ1 483 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 C8orf76Q96K31 380 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 CNDP1Q96KN2 507 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 ZNF778Q96MU6 729 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 MS4A10Q96PG2 267 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 SH3GL1Q99961 368 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 FAM118BQ9BPY3 351 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 LRRCC1Q9C099 1032 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 PRSS22Q9GZN4 317 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 TASP1Q9H6P5 420 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 MID1IP1Q9NPA3 183 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 NRIP3Q9NQ35 241 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 EQTNQ9NQ60 294 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 SIRT3Q9NTG7 399 aaPredicted RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 ZBTB40Q9NUA8 1239 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 PRMT7Q9NVM4 692 aaPredicted RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 TRNAU1APQ9NX07 287 aaKnown RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 CACNG4Q9UBN1 327 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 LEF1Q9UJU2 399 aaPredicted RBP3.23□□□□□ -1.89
CD44-229ENST00000528672 CDH7Q9ULB5 785 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 ACSL5Q9ULC5 683 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 SNX7Q9UNH6 387 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 AGTPBP1Q9UPW5 1226 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 TRIM17Q9Y577 477 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 INSL5Q9Y5Q6 135 aa3.23□□□□□ -1.89
CD44-229ENST00000528672 A0A1W2PPM1 405 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 A0A1W2PRV1 198 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 OOEPA6NGQ2 149 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 BECN2A8MW95 431 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 J3KR12 359 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 ZBTB14O43829 449 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 NMT2O60551 498 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 TLR2O60603 784 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 TSPAN1O60635 241 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 ZNF254O75437 659 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 STAM2O75886 525 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 SNX4O95219 450 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 SMC2O95347 1197 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 STAMBPO95630 424 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 VIMP08670 466 aaKnown RBP3.22□□□□□ -1.89
CD44-229ENST00000528672 FAM58BPP0C7Q3 252 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 CHRNB2P17787 502 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 KELP23276 732 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 PTPN3P26045 913 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 CDC25CP30307 473 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 GABRA5P31644 462 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 PEX5P50542 639 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 NAGLUP54802 743 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 EVCP57679 992 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 KRTAP10-9P60411 292 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 POLR2FP61218 127 aaKnown RBP3.22□□□□□ -1.89
CD44-229ENST00000528672 CSNK2A1P68400 391 aaPredicted RBP3.22□□□□□ -1.89
CD44-229ENST00000528672 PPATQ06203 517 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 CCDC173Q0VFZ6 552 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 ITGA7Q13683 1181 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 RRS1Q15050 365 aaKnown RBP3.22□□□□□ -1.89
CD44-229ENST00000528672 OASLQ15646 514 aaKnown RBP3.22□□□□□ -1.89
CD44-229ENST00000528672 TWIST1Q15672 202 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 SRSF7Q16629 238 aaKnown RBP eCLIP3.22□□□□□ -1.89
CD44-229ENST00000528672 CLPPQ16740 277 aaPredicted RBP3.22□□□□□ -1.89
CD44-229ENST00000528672 TWISTNBQ3B726 338 aaPredicted RBP3.22□□□□□ -1.89
CD44-229ENST00000528672 CCDC152Q4G0S7 254 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 BOLA3Q53S33 107 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 HHATQ5VTY9 493 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 ZDHHC20Q5W0Z9 365 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 FAM91A1Q658Y4 838 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 RAB12Q6IQ22 244 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 DUS1LQ6P1R4 473 aaKnown RBP3.22□□□□□ -1.89
CD44-229ENST00000528672 SHC4Q6S5L8 630 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 KDELC1Q6UW63 502 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 FAM198BQ6UWH4 519 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 B3GNT6Q6ZMB0 384 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 DEF8Q6ZN54 512 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 SHFQ7M4L6 423 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 ABI3BPQ7Z7G0 1075 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 DSG4Q86SJ6 1040 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 SLC9B2Q86UD5 537 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 DSELQ8IZU8 1212 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 KRT222Q8N1A0 295 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 ZNF619Q8N2I2 560 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 RASGEF1CQ8N431 466 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 LINC00469Q8N7U9 141 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 SPERTQ8NA61 448 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 CSNK2A3Q8NEV1 391 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 ENGASEQ8NFI3 743 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 CCDC148Q8NFR7 591 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 TBC1D16Q8TBP0 767 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 WDR20Q8TBZ3 569 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 GRAPLQ8TC17 118 aaPredicted RBP3.22□□□□□ -1.89
CD44-229ENST00000528672 TMEM163Q8TC26 289 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 TMEM174Q8WUU8 243 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 ASB5Q8WWX0 329 aa3.22□□□□□ -1.89
CD44-229ENST00000528672 ATL1Q8WXF7 558 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms