RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TUBGCP3Q96CW5 907 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 RIPOR3Q96MK2 946 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 HDAC8Q9BY41 377 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 IPPKQ9H8X2 491 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 WWOXQ9NZC7 414 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 NKX1-2Q9UD57 310 aaPredicted RBP20.3■□□□□ 0.84
VPS28-209ENST00000528142 TCF20Q9UGU0 1960 aaKnown RBP20.3■□□□□ 0.84
VPS28-209ENST00000528142 UNC80Q8N2C7 3258 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 C1QTNF3-AMACRE9PGA6 284 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 GFYI3L273 518 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 SLC16A5O15375 505 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 CCNT2O60583 730 aaKnown RBP20.3■□□□□ 0.84
VPS28-209ENST00000528142 MMP20O60882 483 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 SLCO2B1O94956 709 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 CHEK2O96017 543 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 OTCP00480 354 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 APODP05090 189 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 C6P13671 934 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 GPX3P22352 226 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 GDF5P43026 501 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 ACADVLP49748 655 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 MLLT1Q03111 559 aaPredicted RBP20.3■□□□□ 0.84
VPS28-209ENST00000528142 TBL3Q12788 808 aaKnown RBP20.3■□□□□ 0.84
VPS28-209ENST00000528142 TMEM115Q12893 351 aaPredicted RBP20.3■□□□□ 0.84
VPS28-209ENST00000528142 OGFOD2Q6N063 350 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 MBOAT1Q6ZNC8 495 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 UBE2R2Q712K3 238 aaPredicted RBP20.3■□□□□ 0.84
VPS28-209ENST00000528142 NLRP8Q86W28 1048 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 DSELQ8IZU8 1212 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 OR4F6Q8NGB9 312 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 MSLNLQ96KJ4 702 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 CCT7Q99832 543 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 PARVBQ9HBI1 364 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 DYRK4Q9NR20 520 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 CLDND1Q9NY35 253 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 L3MBTL1Q9Y468 752 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 STON1Q9Y6Q2 735 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 BRWD1Q9NSI6 2320 aa20.29■□□□□ 0.84
VPS28-209ENST00000528142 A0A1W2PPC1 479 aa20.29■□□□□ 0.84
VPS28-209ENST00000528142 ANXA5P08758 320 aa20.29■□□□□ 0.84
VPS28-209ENST00000528142 HGFP14210 728 aa20.29■□□□□ 0.84
VPS28-209ENST00000528142 POU3F3P20264 500 aaPredicted RBP20.29■□□□□ 0.84
VPS28-209ENST00000528142 GGT5P36269 586 aa20.29■□□□□ 0.84
VPS28-209ENST00000528142 P2RY2P41231 377 aa20.29■□□□□ 0.84
VPS28-209ENST00000528142 PRLHRP49683 370 aa20.29■□□□□ 0.84
VPS28-209ENST00000528142 SP140Q13342 867 aa20.29■□□□□ 0.84
VPS28-209ENST00000528142 MAPRE2Q15555 327 aa20.29■□□□□ 0.84
VPS28-209ENST00000528142 TRMT5Q32P41 509 aaKnown RBP20.29■□□□□ 0.84
VPS28-209ENST00000528142 AGKQ53H12 422 aa20.29■□□□□ 0.84
VPS28-209ENST00000528142 ASZ1Q8WWH4 475 aa20.29■□□□□ 0.84
VPS28-209ENST00000528142 NUS1Q96E22 293 aa20.29■□□□□ 0.84
VPS28-209ENST00000528142 EFCAB1Q9HAE3 211 aa20.29■□□□□ 0.84
VPS28-209ENST00000528142 OPTCQ9UBM4 332 aa20.29■□□□□ 0.84
VPS28-209ENST00000528142 PIKFYVEQ9Y2I7 2098 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 TMEM202A6NGA9 273 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 K7EPI3 171 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 INPP4BO15327 924 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 CIB2O75838 187 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 CAPN1P07384 714 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 PSMD8P48556 350 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 ACTR3P61158 418 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 DPTQ07507 201 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 ZXDCQ2QGD7 858 aaPredicted RBP20.28■□□□□ 0.84
VPS28-209ENST00000528142 TCHHL1Q5QJ38 904 aaPredicted RBP20.28■□□□□ 0.84
VPS28-209ENST00000528142 TTC23LQ6PF05 361 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 C16orf89Q6UX73 402 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 RIPOR1Q6ZS17 1223 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 CHCHD4Q8N4Q1 142 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 OR2T11Q8NH01 316 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 ARL15Q9NXU5 204 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 FADS3Q9Y5Q0 445 aa20.28■□□□□ 0.84
VPS28-209ENST00000528142 TSPAN6O43657 245 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 LMNAP02545 664 aaKnown RBP20.27■□□□□ 0.84
VPS28-209ENST00000528142 MTHFRP42898 656 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 SOX9P48436 509 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 CNTN1Q12860 1018 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 ZRSR2Q15696 482 aaKnown RBP20.27■□□□□ 0.84
VPS28-209ENST00000528142 PAOXQ6QHF9 649 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 SCIMPQ6UWF3 145 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 NUDT18Q6ZVK8 323 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 MILR1Q7Z6M3 343 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 FUNDC1Q8IVP5 155 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 METTL6Q8TCB7 284 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 ATP6V1E2Q96A05 226 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 RAB7BQ96AH8 199 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 ERLEC1Q96DZ1 483 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 EPHX3Q9H6B9 360 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 DCLRE1BQ9H816 532 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 PFDN4Q9NQP4 134 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 CCDC167Q9P0B6 97 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 DENND4AQ7Z401 1863 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 K7ESM1 405 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 FBP2O00757 339 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 ATG13O75143 517 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 STK16O75716 305 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 GALK1P51570 392 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 MTTPP55157 894 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 STX1BP61266 288 aa20.27■□□□□ 0.84
VPS28-209ENST00000528142 IRX1P78414 480 aaPredicted RBP20.27■□□□□ 0.84
VPS28-209ENST00000528142 STX5Q13190 355 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms