RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 ARL5AQ9Y689 179 aa22.93■■□□□ 1.26
CPSF1-202ENST00000527827 KLHL33A6NCF5 533 aa22.92■■□□□ 1.26
CPSF1-202ENST00000527827 AGTP01019 485 aa22.92■■□□□ 1.26
CPSF1-202ENST00000527827 CDH3P22223 829 aa22.92■■□□□ 1.26
CPSF1-202ENST00000527827 ITGA1P56199 1179 aa22.92■■□□□ 1.26
CPSF1-202ENST00000527827 FAM198BQ6UWH4 519 aa22.92■■□□□ 1.26
CPSF1-202ENST00000527827 DAAM2Q86T65 1068 aa22.92■■□□□ 1.26
CPSF1-202ENST00000527827 OR1L3Q8NH93 324 aa22.92■■□□□ 1.26
CPSF1-202ENST00000527827 P3H4Q92791 437 aa22.92■■□□□ 1.26
CPSF1-202ENST00000527827 NUDT9Q9BW91 350 aa22.92■■□□□ 1.26
CPSF1-202ENST00000527827 C1GALT1Q9NS00 363 aa22.92■■□□□ 1.26
CPSF1-202ENST00000527827 PCMTD2Q9NV79 361 aa22.92■■□□□ 1.26
CPSF1-202ENST00000527827 COLEC10Q9Y6Z7 277 aa22.92■■□□□ 1.26
CPSF1-202ENST00000527827 SPOPO43791 374 aa22.91■■□□□ 1.26
CPSF1-202ENST00000527827 DPM1O60762 260 aa22.91■■□□□ 1.26
CPSF1-202ENST00000527827 POLBP06746 335 aa22.91■■□□□ 1.26
CPSF1-202ENST00000527827 GSE1Q14687 1217 aa22.91■■□□□ 1.26
CPSF1-202ENST00000527827 TCEAL1Q15170 157 aa22.91■■□□□ 1.26
CPSF1-202ENST00000527827 HAUS1Q96CS2 278 aa22.91■■□□□ 1.26
CPSF1-202ENST00000527827 CLIP3Q96DZ5 547 aa22.91■■□□□ 1.26
CPSF1-202ENST00000527827 QKIQ96PU8 341 aaKnown RBP eCLIP22.91■■□□□ 1.26
CPSF1-202ENST00000527827 GORASP1Q9BQQ3 440 aa22.91■■□□□ 1.26
CPSF1-202ENST00000527827 FSD1LQ9BXM9 530 aa22.91■■□□□ 1.26
CPSF1-202ENST00000527827 MFRPQ9BY79 579 aa22.91■■□□□ 1.26
CPSF1-202ENST00000527827 ASB8Q9H765 288 aa22.91■■□□□ 1.26
CPSF1-202ENST00000527827 FANCEQ9HB96 536 aa22.91■■□□□ 1.26
CPSF1-202ENST00000527827 ZNHIT6Q9NWK9 470 aaKnown RBP22.91■■□□□ 1.26
CPSF1-202ENST00000527827 CUEDC1Q9NWM3 386 aaPredicted RBP22.91■■□□□ 1.26
CPSF1-202ENST00000527827 RSPH14Q9UHP6 348 aa22.91■■□□□ 1.26
CPSF1-202ENST00000527827 FKBPLQ9UIM3 349 aa22.91■■□□□ 1.26
CPSF1-202ENST00000527827 FER1L5A0AVI2 2057 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 TCP11X1B4DZS4 312 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 ZNF185O15231 689 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 SRP72O76094 671 aaKnown RBP22.9■■□□□ 1.26
CPSF1-202ENST00000527827 PYGMP11217 842 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 NDUFS1P28331 727 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 VAV2P52735 878 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 XIAPP98170 497 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 PRKAA1Q13131 559 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 TAF1AQ15573 450 aaPredicted RBP22.9■■□□□ 1.26
CPSF1-202ENST00000527827 SLC6A19Q695T7 634 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 SYTL1Q8IYJ3 562 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 CFAP206Q8IYR0 622 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 ZBTB2Q8N680 514 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 RBMXL3Q8N7X1 1067 aaKnown RBP22.9■■□□□ 1.26
CPSF1-202ENST00000527827 GLIS1Q8NBF1 620 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 ACVR1CQ8NER5 493 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 OR4K2Q8NGD2 314 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 NRTNQ99748 197 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 NHEJ1Q9H9Q4 299 aaPredicted RBP22.9■■□□□ 1.26
CPSF1-202ENST00000527827 MYO9AB2RTY4 2548 aa22.9■■□□□ 1.26
CPSF1-202ENST00000527827 PIKFYVEQ9Y2I7 2098 aa22.89■■□□□ 1.26
CPSF1-202ENST00000527827 CCDC88CQ9P219 2028 aa22.89■■□□□ 1.26
CPSF1-202ENST00000527827 hCG_1818297A0A087WSY0 165 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 AGAP14A8MT82 685 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 TMEM150CB9EJG8 249 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 PREPP48147 710 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 MRPL49Q13405 166 aaKnown RBP22.89■■□□□ 1.25
CPSF1-202ENST00000527827 TRIM14Q14142 442 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 KRT33BQ14525 404 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 EIF2S3LQ2VIR3 472 aaKnown RBP22.89■■□□□ 1.25
CPSF1-202ENST00000527827 TFDP3Q5H9I0 405 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 TMEM102Q8N9M5 508 aaPredicted RBP22.89■■□□□ 1.25
CPSF1-202ENST00000527827 HM13Q8TCT9 377 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 CCDC42Q96M95 316 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 CCM2Q9BSQ5 444 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 FICDQ9BVA6 458 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 ACTR5Q9H9F9 607 aaPredicted RBP22.89■■□□□ 1.25
CPSF1-202ENST00000527827 SYTL2Q9HCH5 934 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 ABHD10Q9NUJ1 306 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 TRHDEQ9UKU6 1024 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 HEBP2Q9Y5Z4 205 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 CACNA1DQ01668 2161 aa22.89■■□□□ 1.25
CPSF1-202ENST00000527827 A6NL46 340 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 C2orf81A6NN90 581 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 HACD1B0YJ81 288 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 MATN2O00339 956 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 BTN3A3O00478 584 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 PSTPIP1O43586 416 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 MSL3P1P0C860 447 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 ST6GAL1P15907 406 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 PRDX3P30048 256 aaKnown RBP22.88■■□□□ 1.25
CPSF1-202ENST00000527827 PRLHRP49683 370 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 ATP1A4Q13733 1029 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 PTCHD3Q3KNS1 767 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 MED25Q71SY5 747 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 HPS6Q86YV9 775 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 LCN9Q8WX39 176 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 PNPLA2Q96AD5 504 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 PITPNM3Q9BZ71 974 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 GBA3Q9H227 469 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 SRMSQ9H3Y6 488 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 C10orf88Q9H8K7 445 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 SLAMF7Q9NQ25 335 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 CASS4Q9NQ75 786 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 ITPR2Q14571 2701 aa22.88■■□□□ 1.25
CPSF1-202ENST00000527827 GSAPA4D1B5 854 aa22.87■■□□□ 1.25
CPSF1-202ENST00000527827 BTN3A1O00481 513 aa22.87■■□□□ 1.25
CPSF1-202ENST00000527827 TPM3P06753 285 aa22.87■■□□□ 1.25
CPSF1-202ENST00000527827 CYP2A7P20853 494 aa22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms