RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ANKS6Q68DC2 871 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 SLC22A15Q8IZD6 547 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 LILRA3Q8N6C8 439 aaPredicted RBP20.6■□□□□ 0.89
VPS28-208ENST00000527797 PDPRQ8NCN5 879 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 DLG3Q92796 817 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 TPSD1Q9BZJ3 242 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 GSTO2Q9H4Y5 243 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 C6orf106Q9H6K1 298 aaPredicted RBP20.6■□□□□ 0.89
VPS28-208ENST00000527797 RMI1Q9H9A7 625 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 COG4Q9H9E3 785 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 PARVBQ9HBI1 364 aa20.6■□□□□ 0.89
VPS28-208ENST00000527797 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.6■□□□□ 0.89
VPS28-208ENST00000527797 C10orf142B7Z368 130 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 GFYI3L273 518 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 EBAG9O00559 213 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 MATN4O95460 622 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 GUCA1CO95843 209 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 HIST1H2AGP0C0S8 130 aaPredicted RBP20.59■□□□□ 0.89
VPS28-208ENST00000527797 HIST1H2ADP20671 130 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 MAPK9P45984 424 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 RPIAP49247 311 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 GALNT1Q10472 559 aaPredicted RBP20.59■□□□□ 0.89
VPS28-208ENST00000527797 ABRQ12979 859 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 PLA2G4EQ3MJ16 856 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 C11orf96Q7Z7L8 435 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 AMZ2Q86W34 360 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 ZNF781Q8N8C0 355 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 C10orf82Q8WW14 230 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 HIST1H2AHQ96KK5 128 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 HIST1H2AJQ99878 128 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 EGFL8Q99944 293 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 PLCD4Q9BRC7 762 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 SIKE1Q9BRV8 207 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 H2AFJQ9BTM1 129 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 C1QTNF3Q9BXJ4 246 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 GULP1Q9UBP9 304 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 ZNHIT2Q9UHR6 403 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 PDE10AQ9Y233 779 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 PRKAB1Q9Y478 270 aa20.59■□□□□ 0.89
VPS28-208ENST00000527797 TNPO3Q9Y5L0 923 aaKnown RBP20.59■□□□□ 0.89
VPS28-208ENST00000527797 A0A0G2JND7 137 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 KLHL33A6NCF5 533 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 H3BM21 787 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 FSBPO95073 299 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 CYP2A7P20853 494 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 RPL14P50914 215 aaKnown RBP20.58■□□□□ 0.89
VPS28-208ENST00000527797 ARFIP2P53365 341 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 CLDN2P57739 230 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 CDKL4Q5MAI5 379 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 SULT1C3Q6IMI6 304 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 RPS27LQ71UM5 84 aaKnown RBP20.58■□□□□ 0.89
VPS28-208ENST00000527797 CAMKK1Q8N5S9 505 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 MCOLN3Q8TDD5 553 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 FOPNLQ96NB1 174 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 GPR174Q9BXC1 333 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 HAO1Q9UJM8 370 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 SLC17A4Q9Y2C5 497 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 PCYT1BQ9Y5K3 369 aaPredicted RBP20.58■□□□□ 0.89
VPS28-208ENST00000527797 USH1CQ9Y6N9 552 aa20.58■□□□□ 0.89
VPS28-208ENST00000527797 PRUNE2Q8WUY3 3088 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 POM121BA6NF01 834 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 ERICH4A6NGS2 130 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 LRRC14BA6NHZ5 514 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 CEACAM5P06731 702 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 RPS17P08708 135 aaKnown RBP20.57■□□□□ 0.88
VPS28-208ENST00000527797 ANXA5P08758 320 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 MPSTP25325 297 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 PDHA2P29803 388 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 AGTR2P50052 363 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 KIAA1024LP59773 190 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 ZXDAP98168 799 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 CDKL1Q00532 357 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 MTAPQ13126 283 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 FOXR1Q6PIV2 292 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 OXR1Q8N573 874 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 RLN3Q8WXF3 142 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 SHCBP1LQ9BZQ2 653 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 KCNK13Q9HB14 408 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 CD320Q9NPF0 282 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 KCNK4Q9NYG8 393 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 PTBP2Q9UKA9 531 aaKnown RBP20.57■□□□□ 0.88
VPS28-208ENST00000527797 HS3ST3A1Q9Y663 406 aa20.57■□□□□ 0.88
VPS28-208ENST00000527797 IGHV1OR15-9A0A0B4J2B8 117 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 PSIP1O75475 530 aaKnown RBP20.56■□□□□ 0.88
VPS28-208ENST00000527797 IGHV4-34P06331 123 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 MAP4P27816 1152 aaKnown RBP20.56■□□□□ 0.88
VPS28-208ENST00000527797 HK2P52789 917 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 AQP5P55064 265 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 CDH13P55290 713 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 RPA4Q13156 261 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 NFE2L1Q14494 772 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 PCBP2Q15366 365 aaKnown RBP eCLIP20.56■□□□□ 0.88
VPS28-208ENST00000527797 FBXO48Q5FWF7 155 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 CUZD1Q86UP6 607 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 RASGRP3Q8IV61 690 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 CFAP61Q8NHU2 1237 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 AGR3Q8TD06 166 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 BMFQ96LC9 184 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 TMEM120AQ9BXJ8 343 aa20.56■□□□□ 0.88
VPS28-208ENST00000527797 DPEP2Q9H4A9 486 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms