RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 TM6SF2Q9BZW4 377 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 USP22Q9UPT9 525 aa20.87■□□□□ 0.93
VPS28-205ENST00000526204 SOCS5O75159 536 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 TRIM16O95361 564 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 RAP2AP10114 183 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 GGT1P19440 569 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 AKT1P31749 480 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 TTKP33981 857 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 MTPNP58546 118 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 KIAA0040Q15053 153 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 DNAJB7Q7Z6W7 309 aaPredicted RBP20.86■□□□□ 0.93
VPS28-205ENST00000526204 DTWD1Q8N5C7 304 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 PAF1Q8N7H5 531 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 ITFG1Q8TB96 612 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 CD99L2Q8TCZ2 262 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 SLC13A3Q8WWT9 602 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 ACDQ96AP0 544 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 ELOVL2Q9NXB9 296 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 WWOXQ9NZC7 414 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 K7ERQ8 282 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 ITGB6P18564 788 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 DGKQP52824 942 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 GPRC6AQ5T6X5 926 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 FBXL20Q96IG2 436 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 HTATIP2Q9BUP3 242 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 NTMT1Q9BV86 223 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 GORASP2Q9H8Y8 452 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 RDH14Q9HBH5 336 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 PKD2L2Q9NZM6 624 aa20.86■□□□□ 0.93
VPS28-205ENST00000526204 GLYATL1P3A0A0U1RQE8 302 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 GREM1O60565 184 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 ULK1O75385 1050 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 SEC24DO94855 1032 aaPredicted RBP20.85■□□□□ 0.93
VPS28-205ENST00000526204 PRSS23O95084 383 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 SOD2P04179 222 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 EBLN1P0CF75 366 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 RPS6KA3P51812 740 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 RPL38P63173 70 aaKnown RBP20.85■□□□□ 0.93
VPS28-205ENST00000526204 NOGQ13253 232 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 Q6ZNB5 142 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 USP51Q70EK9 711 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 TRIM46Q7Z4K8 759 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 METTL3Q86U44 580 aaKnown RBP20.85■□□□□ 0.93
VPS28-205ENST00000526204 CBARPQ8N350 705 aaPredicted RBP20.85■□□□□ 0.93
VPS28-205ENST00000526204 CLDN19Q8N6F1 224 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 RHBDF1Q96CC6 855 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 SH3GL1Q99961 368 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 C17orf80Q9BSJ5 609 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 APOL5Q9BWW9 433 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 TRPS1Q9UHF7 1281 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 EVLQ9UI08 416 aaPredicted RBP20.85■□□□□ 0.93
VPS28-205ENST00000526204 CRLS1Q9UJA2 301 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 AP3M1Q9Y2T2 418 aa20.85■□□□□ 0.93
VPS28-205ENST00000526204 HTTP42858 3142 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 K7EPI3 171 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 PRRG1O14668 218 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 IL6P05231 212 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 RPL10P27635 214 aaKnown RBP20.84■□□□□ 0.93
VPS28-205ENST00000526204 GNPDA1P46926 289 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 ADARB1P78563 741 aaKnown RBP20.84■□□□□ 0.93
VPS28-205ENST00000526204 CHRNB3Q05901 458 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 SELPLGQ14242 412 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 TTLL9Q3SXZ7 439 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 CACHD1Q5VU97 1274 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 GRAMD4Q6IC98 578 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 FKBP9P1Q75LS8 142 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 TMEM150AQ86TG1 271 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 FAM217AQ8IXS0 508 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 WFDC5Q8TCV5 224 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 LKAAEAR1Q8TD35 194 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 CCDC97Q96F63 343 aaPredicted RBP20.84■□□□□ 0.93
VPS28-205ENST00000526204 ZNF583Q96ND8 569 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 UGT2B28Q9BY64 529 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 ASIC5Q9NY37 505 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 PRSS21Q9Y6M0 314 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 RSL1D1O76021 490 aaKnown RBP20.84■□□□□ 0.93
VPS28-205ENST00000526204 CLDN7O95471 211 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 ALBP02768 609 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 MT-ND1P03886 318 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 BPIP17213 487 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 HNF1BP35680 557 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 PIK3CGP48736 1102 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 EPHB3P54753 998 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 PTPN5P54829 565 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 CDKN3Q16667 212 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 PHKG1Q16816 387 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 OR6K2Q8NGY2 324 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 GFM2Q969S9 779 aaKnown RBP20.84■□□□□ 0.93
VPS28-205ENST00000526204 ATP13A3Q9H7F0 1226 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 LATS2Q9NRM7 1088 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 V9GYQ6 96 aa20.84■□□□□ 0.93
VPS28-205ENST00000526204 SCAMP3O14828 347 aaKnown RBP20.83■□□□□ 0.93
VPS28-205ENST00000526204 SNAP29O95721 258 aa20.83■□□□□ 0.93
VPS28-205ENST00000526204 CDK4P11802 303 aa20.83■□□□□ 0.93
VPS28-205ENST00000526204 EPB42P16452 691 aa20.83■□□□□ 0.93
VPS28-205ENST00000526204 SPAM1P38567 509 aa20.83■□□□□ 0.93
VPS28-205ENST00000526204 MAPKAPK3Q16644 382 aa20.83■□□□□ 0.93
VPS28-205ENST00000526204 TTC23LQ6PF05 361 aa20.83■□□□□ 0.93
VPS28-205ENST00000526204 APCDD1Q8J025 514 aa20.83■□□□□ 0.93
VPS28-205ENST00000526204 OR2T12Q8NG77 320 aa20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms