RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 SDK2Q58EX2 2172 aa11.21□□□□□ -0.62
VCAN-212ENST00000515397 MN1Q10571 1320 aaPredicted RBP11.2□□□□□ -0.62
VCAN-212ENST00000515397 K7ENP7 123 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 KIF5CO60282 957 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 VAPBO95292 243 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 FOLR1P15328 257 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 ZNF28P17035 718 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 NSG1P42857 185 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 NPY2RP49146 381 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 BOP1Q14137 746 aaKnown RBP11.2□□□□□ -0.62
VCAN-212ENST00000515397 FASTKD1Q53R41 847 aaKnown RBP11.2□□□□□ -0.62
VCAN-212ENST00000515397 MANEAQ5SRI9 462 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 LRRC8BQ6P9F7 803 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 INO80CQ6PI98 192 aaPredicted RBP11.2□□□□□ -0.62
VCAN-212ENST00000515397 CCDC137Q6PK04 289 aaKnown RBP11.2□□□□□ -0.62
VCAN-212ENST00000515397 AFTPHQ6ULP2 937 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 PCSK4Q6UW60 755 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 RBM12BQ8IXT5 1001 aaKnown RBP11.2□□□□□ -0.62
VCAN-212ENST00000515397 C17orf53Q8N3J3 647 aaPredicted RBP11.2□□□□□ -0.62
VCAN-212ENST00000515397 TFGQ92734 400 aaPredicted RBP11.2□□□□□ -0.62
VCAN-212ENST00000515397 CAPZA3Q96KX2 299 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 OR6C1Q96RD1 312 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 C19orf43Q9BQ61 176 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 HGH1Q9BTY7 390 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 KLHL25Q9H0H3 589 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 EPB41L1Q9H4G0 881 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 EIF2B3Q9NR50 452 aaKnown RBP11.2□□□□□ -0.62
VCAN-212ENST00000515397 HOMER3Q9NSC5 361 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 BFARQ9NZS9 450 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 ACSL6Q9UKU0 697 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 PLAGL1Q9UM63 463 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 SSUH2Q9Y2M2 353 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 PCDHGA3Q9Y5H0 932 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 COLEC10Q9Y6Z7 277 aa11.2□□□□□ -0.62
VCAN-212ENST00000515397 C17orf113A0A1B0GUU1 675 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 OR5K3A6NET4 321 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 BHMG1C9JSJ3 638 aaPredicted RBP11.19□□□□□ -0.62
VCAN-212ENST00000515397 STMND1H3BQB6 276 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 PGRMC1O00264 195 aaKnown RBP11.19□□□□□ -0.62
VCAN-212ENST00000515397 IFRD1O00458 451 aaPredicted RBP11.19□□□□□ -0.62
VCAN-212ENST00000515397 POLR1CO15160 346 aaPredicted RBP11.19□□□□□ -0.62
VCAN-212ENST00000515397 CD3EAPO15446 510 aaKnown RBP11.19□□□□□ -0.62
VCAN-212ENST00000515397 TMEM63AO94886 807 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 ARNTP27540 789 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 CCR7P32248 378 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 GNG11P61952 73 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 ACVR1Q04771 509 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 ITIH4Q14624 930 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 KCNJ11Q14654 390 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 DNTTIP2Q5QJE6 756 aaKnown RBP11.19□□□□□ -0.62
VCAN-212ENST00000515397 CAND1Q86VP6 1230 aaKnown RBP11.19□□□□□ -0.62
VCAN-212ENST00000515397 VRK3Q8IV63 474 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 CACNA2D3Q8IZS8 1091 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 OTUD6BQ8N6M0 293 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 IL22RA1Q8N6P7 574 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 OR5AR1Q8NGP9 310 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 CFAP61Q8NHU2 1237 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 LCN9Q8WX39 176 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 CPT1BQ92523 772 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.19□□□□□ -0.62
VCAN-212ENST00000515397 FAM136AQ96C01 138 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 ASPSCR1Q9BZE9 553 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 SPRY4Q9C004 299 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 KIR3DX1Q9H7L2 352 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 FBXO8Q9NRD0 319 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 TREX1Q9NSU2 369 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 CATSPERZQ9NTU4 200 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 SIDT1Q9NXL6 827 aaKnown RBP11.19□□□□□ -0.62
VCAN-212ENST00000515397 TSR3Q9UJK0 312 aaKnown RBP11.19□□□□□ -0.62
VCAN-212ENST00000515397 PILRAQ9UKJ1 303 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 SNX12Q9UMY4 172 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 TDRKHQ9Y2W6 561 aaKnown RBP11.19□□□□□ -0.62
VCAN-212ENST00000515397 NEU2Q9Y3R4 380 aa11.19□□□□□ -0.62
VCAN-212ENST00000515397 FASNP49327 2511 aaKnown RBP11.19□□□□□ -0.62
VCAN-212ENST00000515397 PIKFYVEQ9Y2I7 2098 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 LOC101059948A0A1B0GTJ6 334 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 UBA6A0AVT1 1052 aaPredicted RBP11.18□□□□□ -0.62
VCAN-212ENST00000515397 GSAPA4D1B5 854 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 BTN3A3O00478 584 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 RAD1O60671 282 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 STK17BO94768 372 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 AP2A2O94973 939 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 TIAF1O95411 115 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 ANKRD34CP0C6C1 535 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 OR56A5P0C7T3 313 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 EBLN1P0CF75 366 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 TPSB2P20231 275 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 KPNA2P52292 529 aaKnown RBP11.18□□□□□ -0.62
VCAN-212ENST00000515397 UCNP55089 124 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 HSPA14Q0VDF9 509 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 ABRQ12979 859 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 LAMB3Q13751 1172 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 LY6DQ14210 128 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 TPSAB1Q15661 275 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 SYTL3Q4VX76 610 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 TAF1BQ53T94 588 aaPredicted RBP11.18□□□□□ -0.62
VCAN-212ENST00000515397 ARMC6Q6NXE6 501 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 CASC4Q6P4E1 433 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 CEACAM20Q6UY09 585 aa11.18□□□□□ -0.62
VCAN-212ENST00000515397 C4orf22Q6V702 233 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms