RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ZDHHC18Q9NUE0 388 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 MOCS1Q9NZB8 636 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 KLHL42Q9P2K6 505 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 SPEGQ15772 3267 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 IGHV1OR21-1A0A087WYE8 117 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 A0A1W2PQM1 296 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 GPC4O75487 556 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 SLCO2B1O94956 709 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 CPNE6O95741 557 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 CHRM3P20309 590 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 CD1CP29017 333 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 PDHA2P29803 388 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 MAGEA4P43358 317 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 TUBB4BP68371 445 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 MGAT5Q09328 741 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 BOP1Q14137 746 aaKnown RBP13.94□□□□□ -0.18
NUP54-216ENST00000514901 KRT33BQ14525 404 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 CTSL3PQ5NE16 218 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 PLEKHS1Q5SXH7 462 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 CCNI2Q6ZMN8 369 aaPredicted RBP13.94□□□□□ -0.18
NUP54-216ENST00000514901 C3orf62Q6ZUJ4 267 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 OTOAQ7RTW8 1153 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 PDZD3Q86UT5 571 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 PIM3Q86V86 326 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 CCDC25Q86WR0 208 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 UNC5BQ8IZJ1 945 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 LILRA3Q8N6C8 439 aaPredicted RBP13.94□□□□□ -0.18
NUP54-216ENST00000514901 IFT81Q8WYA0 676 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 RMDN2Q96LZ7 410 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 SCNM1Q9BWG6 230 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 MVB12BQ9H7P6 319 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 SYNDIG1Q9H7V2 258 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 FBXO6Q9NRD1 293 aaPredicted RBP13.94□□□□□ -0.18
NUP54-216ENST00000514901 IMP3Q9NV31 184 aaKnown RBP13.94□□□□□ -0.18
NUP54-216ENST00000514901 NSMCE4AQ9NXX6 385 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 ANGPTL2Q9UKU9 493 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 MSRB2Q9Y3D2 182 aa13.94□□□□□ -0.18
NUP54-216ENST00000514901 PTPRBP23467 1997 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 CEP295Q9C0D2 2601 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 IQCF5A8MTL0 148 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 E5RI56 91 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 DUX1O43812 170 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 SPAG6O75602 509 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 HAUS5O94927 633 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 ITGB6P18564 788 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 ACADLP28330 430 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 PREPP48147 710 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 MPP1Q00013 466 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 HSPA14Q0VDF9 509 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 TARDBPQ13148 414 aaKnown RBP eCLIP13.93□□□□□ -0.18
NUP54-216ENST00000514901 BRD3Q15059 726 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 AMZ1Q400G9 498 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 UGT3A1Q6NUS8 523 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 TRMT10BQ6PF06 316 aaKnown RBP13.93□□□□□ -0.18
NUP54-216ENST00000514901 KLHL35Q6PF15 583 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 WDR74Q6RFH5 385 aaPredicted RBP13.93□□□□□ -0.18
NUP54-216ENST00000514901 SLC26A11Q86WA9 606 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 RELL1Q8IUW5 271 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 SLC22A15Q8IZD6 547 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 KRT222Q8N1A0 295 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 SPDYE1Q8NFV5 336 aaPredicted RBP13.93□□□□□ -0.18
NUP54-216ENST00000514901 TFGQ92734 400 aaPredicted RBP13.93□□□□□ -0.18
NUP54-216ENST00000514901 CDKL2Q92772 493 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 KCNJ9Q92806 393 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 TMEM74Q96NL1 305 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 FERD3LQ96RJ6 166 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 ZFATQ9P243 1243 aa13.93□□□□□ -0.18
NUP54-216ENST00000514901 CORO1CQ9ULV4 474 aaPredicted RBP13.93□□□□□ -0.18
NUP54-216ENST00000514901 D6RAR5 112 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 CSO75390 466 aaKnown RBP13.92□□□□□ -0.18
NUP54-216ENST00000514901 UBXN7O94888 489 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 AHSGP02765 367 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 RPN2P04844 631 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 AMD1P17707 334 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 ATP5DP30049 168 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 SKIV2L2P42285 1042 aaKnown RBP13.92□□□□□ -0.18
NUP54-216ENST00000514901 PPM1FP49593 454 aaPredicted RBP13.92□□□□□ -0.18
NUP54-216ENST00000514901 GPR18Q14330 331 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 ISXQ2M1V0 245 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 TTLL9Q3SXZ7 439 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 MAP9Q49MG5 647 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 ZNF789Q5FWF6 425 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 CNSTQ6PJW8 725 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 USP53Q70EK8 1073 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 TBC1D21Q8IYX1 336 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 OR4D9Q8NGE8 314 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 LKAAEAR1Q8TD35 194 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 FMO2Q99518 471 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 AARSD1Q9BTE6 412 aaKnown RBP13.92□□□□□ -0.18
NUP54-216ENST00000514901 STRADBQ9C0K7 418 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 KIR3DX1Q9H7L2 352 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 POLG2Q9UHN1 485 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 KLK13Q9UKR3 277 aa13.92□□□□□ -0.18
NUP54-216ENST00000514901 CFAP20Q9Y6A4 193 aaKnown RBP13.92□□□□□ -0.18
NUP54-216ENST00000514901 KDM1AO60341 852 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 NIPSNAP2O75323 286 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 VPS26AO75436 327 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 TOP3BO95985 862 aaKnown RBP13.91□□□□□ -0.18
NUP54-216ENST00000514901 PROS1P07225 676 aa13.91□□□□□ -0.18
NUP54-216ENST00000514901 CD9P21926 228 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms