RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 OR4K2Q8NGD2 314 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 OR52K1Q8NGK4 314 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 OR10G6Q8NH81 332 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 ASB12Q8WXK4 309 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 STARD8Q92502 1023 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 FAF2Q96CS3 445 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 PWWP2AQ96N64 755 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 CPEB1Q9BZB8 566 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 ZFYVE1Q9HBF4 777 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 SOX13Q9UN79 622 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 NOVA2Q9UNW9 492 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 TMEM5Q9Y2B1 443 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 NUP210Q8TEM1 1887 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 CFAP73A6NFT4 308 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 BANF1O75531 89 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 CDK14O94921 469 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 PAPLNO95428 1278 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 KRT16P08779 473 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 CDC25BP30305 580 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 ATP6V1E1P36543 226 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 PGGT1BP53609 377 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 BNC1Q01954 994 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 PDAP1Q13442 181 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 HSF5Q4G112 596 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 TCAIMQ8N3R3 496 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 OXNAD1Q96HP4 312 aaPredicted RBP7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 TUBGCP5Q96RT8 1024 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 NRTNQ99748 197 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 USP24Q9UPU5 2620 aa7.78□□□□□ -1.16
LIMCH1-219ENST00000514096 ESYT3A0FGR9 886 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 HDAC3O15379 428 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 LILRB5O75023 590 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 CER1O95813 267 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 DGKAP23743 735 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 HADHAP40939 763 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC1A1P43005 524 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 MAPK10P53779 464 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 PLCL1Q15111 1095 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 SF3B4Q15427 424 aaKnown RBP eCLIP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 TEX44Q53QW1 395 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 CERCAMQ5T4B2 595 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 NAPEPLDQ6IQ20 393 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 TIGD7Q6NT04 549 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 NAXDQ8IW45 347 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 TRIM48Q8IWZ4 208 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 SYCE1Q8N0S2 351 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 SLC22A18ASQ8N1D0 253 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 PRR11Q96HE9 360 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 SIAEQ9HAT2 523 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 GLOD4Q9HC38 313 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 DDX28Q9NUL7 540 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 IMP3Q9NV31 184 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 CRLS1Q9UJA2 301 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 KLK13Q9UKR3 277 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 C3orf70A6NLC5 250 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 OR52A4PA6NMU1 304 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 PLRG1O43660 514 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 SHOX2O60902 331 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 OR6B1O95007 311 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 METTL18O95568 372 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 ITGALP20701 1170 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 CDH3P22223 829 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 IL32P24001 234 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 CDKN1CP49918 316 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 MRPS15P82914 257 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 ELP6Q0PNE2 266 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 GPS1Q13098 491 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 HNRNPDQ14103 355 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 BOP1Q14137 746 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 KRT71Q3SY84 523 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 COLEC12Q5KU26 742 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 CLVS2Q5SYC1 327 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 KLHL35Q6PF15 583 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 APLFQ8IW19 511 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 GIMAP1Q8WWP7 306 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 STON2Q8WXE9 905 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 TCF12Q99081 682 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 C1QTNF9BB2RNN3 333 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 ANKRD66B4E2M5 251 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 CNOT3O75175 753 aaKnown RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 LDOC1O95751 146 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 FTH1P19P0C7X4 201 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 C1QTNF9P0C862 333 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 PRPSAP1Q14558 356 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 INO80DQ53TQ3 878 aaPredicted RBP7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 GUSBP11Q6P575 273 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 PHACTR4Q8IZ21 702 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 NRSN1Q8IZ57 195 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 OR1E3Q8WZA6 343 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 CNTNAP3BQ96NU0 1288 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 ADGRE3Q9BY15 652 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 CNTNAP3Q9BZ76 1288 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 FAM83DQ9H4H8 585 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 ASB8Q9H765 288 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 EPB41L5Q9HCM4 733 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 STOML1Q9UBI4 398 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 FAM153AQ9UHL3 310 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 FKBPLQ9UIM3 349 aa7.77□□□□□ -1.17
LIMCH1-219ENST00000514096 PNMA8BQ9ULN7 279 aaPredicted RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms