RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 PUM1Q14671 1186 aaKnown RBP eCLIP3.53□□□□□ -1.84
USP53-205ENST00000509769 RALGPS1Q5JS13 557 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ATF7IP2Q5U623 682 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 LYPLAL1Q5VWZ2 237 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 TRIM40Q6P9F5 258 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 KCTD8Q6ZWB6 473 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 SLC16A9Q7RTY1 509 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 VWA5B2Q8N398 1253 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 KCNRGQ8N5I3 272 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 FNDC5Q8NAU1 212 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 DAGLBQ8NCG7 672 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ZNF248Q8NDW4 579 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 OR2L2Q8NH16 312 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 MFSD8Q8NHS3 518 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 CD101Q93033 1021 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 MAPKAP1Q9BPZ7 522 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 CDK19Q9BWU1 502 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 SPANXDQ9BXN6 97 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 POTEKPQ9BYX7 375 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 KIAA1683Q9H0B3 1180 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 FAM49AQ9H0Q0 323 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 LRRN3Q9H3W5 708 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 SP110Q9HB58 689 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 IFT46Q9NQC8 304 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 STARD7Q9NQZ5 370 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP3.53□□□□□ -1.842e-9■■■■■ 36.4
USP53-205ENST00000509769 EXTL2Q9UBQ6 330 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 APEX2Q9UBZ4 518 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 PCYOX1Q9UHG3 505 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 DNPEPQ9ULA0 475 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 NAALADL1Q9UQQ1 740 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 UGT2A1Q9Y4X1 527 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 NUBP2Q9Y5Y2 271 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 A3GALT2U3KPV4 340 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 FRMPD2Q68DX3 1309 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 ZNF532Q9HCE3 1301 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 A0A0G2JN53 185 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 MGAT4DA6NG13 374 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 MOXD2PA6NHM9 499 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 TMEM210A6NLX4 147 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ZNF891A8MT65 544 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 NT5C1B-RDH14C9J2C7 533 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 HNRNPDLO14979 420 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 CYP26A1O43174 497 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 AP5Z1O43299 807 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 RSL1D1O76021 490 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 TSPAN15O95858 294 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 SMIM6P0DI80 62 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 HOXB1P14653 301 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 ZNF182P17025 639 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 RAB6AP20340 208 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 SNCAP37840 140 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 MAP2K3P46734 347 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 AIF1P55008 147 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 STXBP1P61764 594 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 IFI35P80217 286 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 TAP2Q03519 686 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 SNTA1Q13424 505 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 TTLL4Q14679 1199 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 FASTKD3Q14CZ7 662 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 LRRC41Q15345 812 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 SEC23BQ15437 767 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 LSM12Q3MHD2 195 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 FAM102BQ5T8I3 360 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 METTL11BQ5VVY1 283 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 MEDAGQ5VYS4 303 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 CDCA2Q69YH5 1023 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 C16orf59Q7L2K0 433 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 TRMT1LQ7Z2T5 733 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 PARGQ86W56 976 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ZC3HC1Q86WB0 502 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 PAQR7Q86WK9 346 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 COMMD2Q86X83 199 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 RELL1Q8IUW5 271 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 FAM126BQ8IXS8 530 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 SLC35G2Q8TBE7 412 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 TSPEARQ8WU66 669 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 COPS9Q8WXC6 57 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 SLC7A6OSQ96CW6 309 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 SERAC1Q96JX3 654 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 RIPOR3Q96MK2 946 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ELF4Q99607 663 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 SULT4A1Q9BR01 284 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ACBD6Q9BR61 282 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 YIPF4Q9BSR8 244 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 NXF3Q9H4D5 531 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 PTPRHQ9HD43 1115 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 ADARB2Q9NS39 739 aaKnown RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 SOHLH2Q9NX45 425 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 LGALS13Q9UHV8 139 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 KLHL21Q9UJP4 597 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 PCDHA2Q9Y5H9 948 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 A0A0A6YYJ9 748 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 PI4KAP2A4QPH2 592 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 SLC22A20A6NK97 555 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 KIAA1324LA8MWY0 1029 aaPredicted RBP3.53□□□□□ -1.84
USP53-205ENST00000509769 TNFRSF11BO00300 401 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 CHADO15335 359 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 TMEM127O75204 238 aa3.53□□□□□ -1.84
USP53-205ENST00000509769 MAFO75444 373 aaPredicted RBP3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms