RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 WDR78Q5VTH9 848 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 PAPD4Q6PIY7 484 aaKnown RBP3.36□□□□□ -1.87
VPS50-219ENST00000495039 CHST9Q7L1S5 443 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 HIST3H2AQ7L7L0 130 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 LRRTM1Q86UE6 522 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 HACE1Q8IYU2 909 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 ADGRF2Q8IZF7 708 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 TMTC2Q8N394 836 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 C1orf131Q8NDD1 294 aaKnown RBP3.36□□□□□ -1.87
VPS50-219ENST00000495039 OR8K5Q8NH50 307 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 PGAM5Q96HS1 289 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 SYT15Q9BQS2 421 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 SIL1Q9H173 461 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 HAUS2Q9NVX0 235 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 COPG2Q9UBF2 871 aa3.36□□□□□ -1.87
VPS50-219ENST00000495039 UBA2Q9UBT2 640 aaPredicted RBP3.36□□□□□ -1.87
VPS50-219ENST00000495039 RSF1Q96T23 1441 aaPredicted RBP3.36□□□□□ -1.87
VPS50-219ENST00000495039 A0A087WW49 117 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 KANSL1LA0AUZ9 987 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 A8MZ25 164 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 VILLO15195 856 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 SYNCRIPO60506 623 aaKnown RBP3.35□□□□□ -1.87
VPS50-219ENST00000495039 OR2C1O95371 312 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 TFAP2AP05549 437 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 ACTN1P12814 892 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 CEBPBP17676 345 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 ANXA7P20073 488 aaKnown RBP3.35□□□□□ -1.87
VPS50-219ENST00000495039 UGT1A1P22309 533 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 TM4SF1P30408 202 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 PTGER3P43115 390 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 MRPS34P82930 218 aaKnown RBP3.35□□□□□ -1.87
VPS50-219ENST00000495039 CDC16Q13042 620 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 IKQ13123 557 aaPredicted RBP3.35□□□□□ -1.87
VPS50-219ENST00000495039 PDE1CQ14123 709 aaPredicted RBP3.35□□□□□ -1.87
VPS50-219ENST00000495039 ZNF805Q5CZA5 627 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 FAM205BPQ63HN1 556 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 ACSM2BQ68CK6 577 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 JADE1Q6IE81 842 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 RPAP2Q8IXW5 612 aaPredicted RBP3.35□□□□□ -1.87
VPS50-219ENST00000495039 MOAP1Q96BY2 351 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 ELMOD3Q96FG2 381 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 PIGQQ9BRB3 760 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 RHNO1Q9BSD3 238 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 GHITMQ9H3K2 345 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 MAGIXQ9H6Y5 334 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 PELI2Q9HAT8 420 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 ECHDC1Q9NTX5 307 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 SETD4Q9NVD3 440 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 STK39Q9UEW8 545 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 FBXW11Q9UKB1 542 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 ZNF215Q9UL58 517 aaPredicted RBP3.35□□□□□ -1.87
VPS50-219ENST00000495039 CLIC4Q9Y696 253 aa3.35□□□□□ -1.87
VPS50-219ENST00000495039 ARHGEF40Q8TER5 1519 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 TRMUO75648 421 aaKnown RBP3.34□□□□□ -1.87
VPS50-219ENST00000495039 ICAM1P05362 532 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 RB1P06400 928 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 SRPRAP08240 638 aaKnown RBP3.34□□□□□ -1.87
VPS50-219ENST00000495039 KRTAP1-4P0C5Y4 121 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 ALOX12P18054 663 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 PSMB10P40306 273 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 CAMPP49913 170 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 MC1RQ01726 317 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 CREB5Q02930 508 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 AIMP2Q13155 320 aaKnown RBP3.34□□□□□ -1.87
VPS50-219ENST00000495039 DUOXA1Q1HG43 343 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 PCGF3Q3KNV8 242 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 LCE1CQ5T751 118 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 LCE1BQ5T7P3 118 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 ARHGEF16Q5VV41 709 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 ZDHHC20Q5W0Z9 365 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 KIAA0930Q6ICG6 404 aaPredicted RBP3.34□□□□□ -1.87
VPS50-219ENST00000495039 SDCCAG8Q86SQ7 713 aaPredicted RBP3.34□□□□□ -1.87
VPS50-219ENST00000495039 ISCA2Q86U28 154 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 TSPAN33Q86UF1 283 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 HJURPQ8NCD3 748 aaPredicted RBP3.34□□□□□ -1.87
VPS50-219ENST00000495039 OR1J2Q8NGS2 313 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 HM13Q8TCT9 377 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 GIMAP5Q96F15 307 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 PRAC1Q96KF2 57 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 OR2A14Q96R47 310 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 NUDCD1Q96RS6 583 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 RTP3Q9BQQ7 232 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 MAK16Q9BXY0 300 aaKnown RBP3.34□□□□□ -1.87
VPS50-219ENST00000495039 TMEM39BQ9GZU3 492 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 PIGMQ9H3S5 423 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 PLK3Q9H4B4 646 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 EPB41L5Q9HCM4 733 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 MTMR10Q9NXD2 777 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 FBXL17Q9UF56 701 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 VPS28Q9UK41 221 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.34□□□□□ -1.87
VPS50-219ENST00000495039 NENFQ9UMX5 172 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 MOB4Q9Y3A3 225 aa3.34□□□□□ -1.87
VPS50-219ENST00000495039 EIF4E1BA6NMX2 242 aaKnown RBP3.33□□□□□ -1.88
VPS50-219ENST00000495039 HMGB1P1B2RPK0 211 aaPredicted RBP3.33□□□□□ -1.88
VPS50-219ENST00000495039 OGG1O15527 345 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 TSPAN9O75954 239 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 GABRB1P18505 474 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 HOXD13P35453 343 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms