RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 IL4RP24394 825 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 CHRNA7P36544 502 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 HALP42357 657 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 MTHFRP42898 656 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 CCR5P51681 352 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 HNRNPA3P51991 378 aaKnown RBP2.5□□□□□ -2.01
SMC4-220ENST00000488017 PRKCZQ05513 592 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 LRMPQ12912 555 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 MVPQ14764 893 aaKnown RBP2.5□□□□□ -2.01
SMC4-220ENST00000488017 DCAF10Q5QP82 559 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 KLC3Q6P597 504 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 TMEM64Q6YI46 380 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 PTAR1Q7Z6K3 402 aaPredicted RBP2.5□□□□□ -2.01
SMC4-220ENST00000488017 NIPA2Q8N8Q9 360 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 OR1J1Q8NGS3 322 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 LRRC15Q8TF66 581 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 ARHGAP45Q92619 1136 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 TOMM40LQ969M1 308 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 C1orf147Q96MC9 270 aaPredicted RBP2.5□□□□□ -2.01
SMC4-220ENST00000488017 KAT14Q9H8E8 782 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 ACKR4Q9NPB9 350 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 RIC8AQ9NPQ8 531 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 MIOSQ9NXC5 875 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 GPR52Q9Y2T5 361 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 KIF25-AS1Q9Y6Z4 181 aa2.5□□□□□ -2.01
SMC4-220ENST00000488017 TMEM129A0AVI4 362 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 ASB14A6NK59 587 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 IFRD1O00458 451 aaPredicted RBP2.49□□□□□ -2.01
SMC4-220ENST00000488017 ZNF217O75362 1048 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 PRKRAO75569 313 aaKnown RBP2.49□□□□□ -2.01
SMC4-220ENST00000488017 TLE2Q04725 743 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 NEXNQ0ZGT2 675 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 GAGE2BQ13066 116 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 GAGE2EQ4V326 116 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 GAGE2AQ6NT46 116 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 CORO6Q6QEF8 472 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 CCDC190Q86UF4 302 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 LRRTM4Q86VH4 590 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 CPOQ8IVL8 374 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 ZBTB10Q96DT7 871 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 SLC45A3Q96JT2 553 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 EGLN2Q96KS0 407 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 SGK494Q96LW2 274 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 GFI1Q99684 422 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 DENND2DQ9H6A0 471 aaPredicted RBP2.49□□□□□ -2.01
SMC4-220ENST00000488017 TEX10Q9NXF1 929 aaPredicted RBP2.49□□□□□ -2.01
SMC4-220ENST00000488017 B4GALT7Q9UBV7 327 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 GAGE2DQ9UEU5 116 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 ZNF107Q9UII5 783 aaPredicted RBP2.49□□□□□ -2.01
SMC4-220ENST00000488017 GRID1Q9ULK0 1009 aa2.49□□□□□ -2.01
SMC4-220ENST00000488017 ZNF256Q9Y2P7 627 aaPredicted RBP2.49□□□□□ -2.01
SMC4-220ENST00000488017 A0A1W2PRG0 241 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 EIF3FO00303 357 aaPredicted RBP2.48□□□□□ -2.01
SMC4-220ENST00000488017 GPRIN2O60269 458 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 PIP5K1CO60331 668 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 MELTFP08582 738 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 BCL3P20749 454 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 CYP2A7P20853 494 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 CA6P23280 308 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 CCT5P48643 541 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 PAX9P55771 341 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 LYZP61626 148 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 VAMP2P63027 116 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 TAF12Q16514 161 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 SOWAHCQ53LP3 525 aaPredicted RBP2.48□□□□□ -2.01
SMC4-220ENST00000488017 FHL5Q5TD97 284 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 TSSK4Q6SA08 328 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 VITQ6UXI7 678 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 TPRG1Q6ZUI0 275 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 ZNF534Q76KX8 674 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 ANKRD42Q8N9B4 389 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 KBTBD8Q8NFY9 601 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 CENPTQ96BT3 561 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 GCC1Q96CN9 775 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 GPR63Q9BZJ6 419 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 EPB41L5Q9HCM4 733 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 SPHK2Q9NRA0 654 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 TRMT1Q9NXH9 659 aaKnown RBP2.48□□□□□ -2.01
SMC4-220ENST00000488017 SARDHQ9UL12 918 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 B3GALT5Q9Y2C3 310 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 ANGPTL3Q9Y5C1 460 aa2.48□□□□□ -2.01
SMC4-220ENST00000488017 LOC101059948A0A1B0GTJ6 334 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 CCDC196A0A1B0GTZ2 297 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 ZNF195O14628 629 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 PLPP2O43688 288 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 MAGEC1O60732 1142 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 HOXD4P09016 255 aaPredicted RBP2.47□□□□□ -2.01
SMC4-220ENST00000488017 PRKACGP22612 351 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 MAPK9P45984 424 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 CTCFP49711 727 aaPredicted RBP2.47□□□□□ -2.01
SMC4-220ENST00000488017 HERV-K104P61576 105 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 RFTN1Q14699 578 aaPredicted RBP2.47□□□□□ -2.01
SMC4-220ENST00000488017 ADCK1Q86TW2 530 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 ZNF354CQ86Y25 554 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 GOLGA6L2Q8N9W4 650 aaPredicted RBP2.47□□□□□ -2.01
SMC4-220ENST00000488017 OR10G8Q8NGN5 311 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 SAAL1Q96ER3 474 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 APOPT1Q96IL0 206 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 SCLT1Q96NL6 688 aa2.47□□□□□ -2.01
SMC4-220ENST00000488017 MBNL1Q9NR56 388 aaKnown RBP2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms