RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PRSS51A0A1B0GVH4 220 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 A0A1B0GVT2 93 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 LILRA5A6NI73 299 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 FAM86B1E9PN63 330 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 TNFRSF13BO14836 293 aaPredicted RBP4.96□□□□□ -1.62
UPF3B-203ENST00000478840 BUD23O43709 281 aaKnown RBP4.96□□□□□ -1.62
UPF3B-203ENST00000478840 AKAP8O43823 692 aaKnown RBP4.96□□□□□ -1.62
UPF3B-203ENST00000478840 WISP2O76076 250 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 FAM86B2P0C5J1 330 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 TMEM191BP0C7N4 346 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 TCF4P15884 667 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 STMN1P16949 149 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 CD22P20273 847 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 TNFRSF8P28908 595 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 CORO1AP31146 461 aaKnown RBP4.96□□□□□ -1.62
UPF3B-203ENST00000478840 LHX1P48742 406 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 ASIC1P78348 528 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 PDE1BQ01064 536 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 RUNX1T1Q06455 604 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 COASYQ13057 564 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 SRSF7Q16629 238 aaKnown RBP eCLIP4.96□□□□□ -1.62
UPF3B-203ENST00000478840 FAM174BQ3ZCQ3 159 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 PXDC1Q5TGL8 231 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 TATDN1Q6P1N9 297 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 NOTUMQ6P988 496 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 SLC27A1Q6PCB7 646 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 LINGO4Q6UY18 593 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 CCNI2Q6ZMN8 369 aaPredicted RBP4.96□□□□□ -1.62
UPF3B-203ENST00000478840 TMPRSS11FQ6ZWK6 438 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 CREBRFQ8IUR6 639 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 SRRM1Q8IYB3 904 aaKnown RBP4.96□□□□□ -1.62
UPF3B-203ENST00000478840 SYCP3Q8IZU3 236 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 ZNF611Q8N823 705 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 SLC16A11Q8NCK7 471 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 CTCFLQ8NI51 663 aaPredicted RBP4.96□□□□□ -1.62
UPF3B-203ENST00000478840 PPP4R1Q8TF05 950 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 WASF1Q92558 559 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 PIGTQ969N2 578 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 SNX21Q969T3 373 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 EXOC4Q96A65 974 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 MIB2Q96AX9 1013 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 MOB3AQ96BX8 217 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 OTUB1Q96FW1 271 aaPredicted RBP4.96□□□□□ -1.62
UPF3B-203ENST00000478840 PDLIM5Q96HC4 596 aaKnown RBP4.96□□□□□ -1.62
UPF3B-203ENST00000478840 HES6Q96HZ4 224 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 CDHR1Q96JP9 859 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 FAM84BQ96KN1 310 aaPredicted RBP4.96□□□□□ -1.62
UPF3B-203ENST00000478840 ZNF582Q96NG8 517 aaPredicted RBP4.96□□□□□ -1.62
UPF3B-203ENST00000478840 PCYT2Q99447 389 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 PI4K2AQ9BTU6 479 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 FNDC11Q9BVV2 318 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 DCLK3Q9C098 648 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 SEMA6AQ9H2E6 1030 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 FN3KQ9H479 309 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 LMAN1LQ9HAT1 526 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 TMEM30AQ9NV96 361 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 NPAP1Q9NZP6 1156 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 KLHL9Q9P2J3 617 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 PADI2Q9Y2J8 665 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 YIPF1Q9Y548 306 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 PTGDR2Q9Y5Y4 395 aa4.96□□□□□ -1.62
UPF3B-203ENST00000478840 NEMP2A6NFY4 417 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 ANKRD66B4E2M5 251 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 DDX39AO00148 427 aaKnown RBP4.95□□□□□ -1.62
UPF3B-203ENST00000478840 SLC33A1O00400 549 aaPredicted RBP4.95□□□□□ -1.62
UPF3B-203ENST00000478840 KINO60870 393 aaKnown RBP4.95□□□□□ -1.62
UPF3B-203ENST00000478840 RTN2O75298 545 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 SERPINI2O75830 405 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 MOCS3O95396 460 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 MT-ND3P03897 115 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 CSN3P07498 182 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 PLA2G4BP0C869 781 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 HLA-DPA1P20036 260 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 ACAT1P24752 427 aaKnown RBP4.95□□□□□ -1.62
UPF3B-203ENST00000478840 MPZP25189 248 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 CASP3P42574 277 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 CD81P60033 236 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 STX1BP61266 288 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 DSC1Q08554 894 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 AP1B1Q10567 949 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 DHX34Q14147 1143 aaKnown RBP4.95□□□□□ -1.62
UPF3B-203ENST00000478840 PKN2Q16513 984 aaKnown RBP4.95□□□□□ -1.62
UPF3B-203ENST00000478840 SETMARQ53H47 684 aaPredicted RBP4.95□□□□□ -1.62
UPF3B-203ENST00000478840 ALKBH5Q6P6C2 394 aaKnown RBP4.95□□□□□ -1.62
UPF3B-203ENST00000478840 NHLRC1Q6VVB1 395 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 ZNF517Q6ZMY9 492 aaPredicted RBP4.95□□□□□ -1.62
UPF3B-203ENST00000478840 ZNF704Q6ZNC4 412 aaPredicted RBP4.95□□□□□ -1.62
UPF3B-203ENST00000478840 DGLUCYQ7Z3D6 616 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 FAM219AQ8IW50 185 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 MAP7D3Q8IWC1 876 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 C1orf87Q8N0U7 546 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 PRR26Q8N8Z3 221 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 OR7G3Q8NG95 312 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 OR52I2Q8NH67 350 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 ZFAND2BQ8WV99 257 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 RAD54LQ92698 747 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 MTERF3Q96E29 417 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 ZNF350Q9GZX5 532 aa4.95□□□□□ -1.62
UPF3B-203ENST00000478840 RBM38Q9H0Z9 239 aaKnown RBP4.95□□□□□ -1.62
UPF3B-203ENST00000478840 TMEM206Q9H813 350 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms