RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 ABCB8Q9NUT2 735 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 EYSQ5T1H1 3165 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 ITGB8P26012 769 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 PLCL1Q15111 1095 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 ATP13A5Q4VNC0 1218 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 LRRC66Q68CR7 880 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 GLYATQ6IB77 296 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 TMEM214Q6NUQ4 689 aaKnown RBP18.75■□□□□ 0.59
VIM-203ENST00000469543 CRTC1Q6UUV9 634 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 RBFAQ8N0V3 343 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 ZNF786Q8N393 782 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 SKA2Q8WVK7 121 aaPredicted RBP18.75■□□□□ 0.59
VIM-203ENST00000469543 PDLIM5Q96HC4 596 aaKnown RBP18.75■□□□□ 0.59
VIM-203ENST00000469543 VPS50Q96JG6 964 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 PHF12Q96QT6 1004 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 LTB4R2Q9NPC1 389 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 MRPL17Q9NRX2 175 aaKnown RBP18.75■□□□□ 0.59
VIM-203ENST00000469543 WWOXQ9NZC7 414 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 NEUROG3Q9Y4Z2 214 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 ANGPTL3Q9Y5C1 460 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 SLC4A7Q9Y6M7 1214 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 COMMD3-BMI1R4GMX3 469 aa18.75■□□□□ 0.59
VIM-203ENST00000469543 KIAA0100Q14667 2235 aaKnown RBP18.74■□□□□ 0.59
VIM-203ENST00000469543 UPK3BL1B0FP48 263 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 UPK3BL2E5RIL1 263 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 H3BNH8 94 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 RAD51BO15315 384 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 SNAP29O95721 258 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 C1QCP02747 245 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 URODP06132 367 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 CD9P21926 228 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 HLA-FP30511 346 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 IST1P53990 364 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 FAM174BQ3ZCQ3 159 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 GTDC1Q4AE62 458 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 RNF175Q8N4F7 328 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 ZBTB2Q8N680 514 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 OR10Q1Q8NGQ4 319 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 ZFAND2BQ8WV99 257 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 ISG20Q96AZ6 181 aaKnown RBP18.74■□□□□ 0.59
VIM-203ENST00000469543 RHBDF1Q96CC6 855 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 CENPNQ96H22 339 aaPredicted RBP18.74■□□□□ 0.59
VIM-203ENST00000469543 ZNF558Q96NG5 402 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 TBCDQ9BTW9 1192 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 ADI1Q9BV57 179 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 CHID1Q9BWS9 393 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 ANKRD60Q9BZ19 345 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 CIDEBQ9UHD4 219 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 MICAL3Q7RTP6 2002 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 LHCGRP22888 699 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 AP1S1P61966 158 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 B4GALNT1Q00973 533 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 EMX2Q04743 252 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 HSPA14Q0VDF9 509 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 PLEKHG6Q3KR16 790 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 CERS6Q6ZMG9 384 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 HID1Q8IV36 788 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 FAM126AQ9BYI3 521 aaPredicted RBP18.74■□□□□ 0.59
VIM-203ENST00000469543 CARS2Q9HA77 564 aaKnown RBP18.74■□□□□ 0.59
VIM-203ENST00000469543 HCFC1R1Q9NWW0 138 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 ZIM2Q9NZV7 527 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 HECAQ9UBI9 543 aaPredicted RBP18.74■□□□□ 0.59
VIM-203ENST00000469543 PCDHB1Q9Y5F3 818 aa18.74■□□□□ 0.59
VIM-203ENST00000469543 TGM5O43548 720 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 OTCP00480 354 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 ITGALP20701 1170 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 SLC5A2P31639 672 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 YAP1P46937 504 aaKnown RBP18.73■□□□□ 0.59
VIM-203ENST00000469543 PTSQ03393 145 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 ZIK1Q3SY52 487 aaPredicted RBP18.73■□□□□ 0.59
VIM-203ENST00000469543 C10orf111Q8N326 155 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 RMND5BQ96G75 393 aaPredicted RBP18.73■□□□□ 0.59
VIM-203ENST00000469543 AURKBQ96GD4 344 aaPredicted RBP18.73■□□□□ 0.59
VIM-203ENST00000469543 GNPTGQ9UJJ9 305 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 ZNF490Q9ULM2 529 aaPredicted RBP18.73■□□□□ 0.59
VIM-203ENST00000469543 MYRFQ9Y2G1 1151 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 S100BP04271 92 aaPredicted RBP18.73■□□□□ 0.59
VIM-203ENST00000469543 CCR7P32248 378 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 MERTKQ12866 999 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 ILF2Q12905 390 aaKnown RBP18.73■□□□□ 0.59
VIM-203ENST00000469543 COQ5Q5HYK3 327 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 SPANXN4Q5MJ08 99 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 ASTLQ6HA08 431 aaPredicted RBP18.73■□□□□ 0.59
VIM-203ENST00000469543 SUSD1Q6UWL2 747 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 ZNF783Q6ZMS7 281 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 PTRH1Q86Y79 214 aaKnown RBP18.73■□□□□ 0.59
VIM-203ENST00000469543 VRK3Q8IV63 474 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 TCEAL8Q8IYN2 117 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 PHACTR4Q8IZ21 702 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 RGL4Q8IZJ4 473 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 PDPRQ8NCN5 879 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 ASIC4Q96FT7 647 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 BEGAINQ9BUH8 593 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 LRRC3Q9BY71 257 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 CD244Q9BZW8 370 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 OPTCQ9UBM4 332 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 CEPT1Q9Y6K0 416 aa18.73■□□□□ 0.59
VIM-203ENST00000469543 KANSL1LA0AUZ9 987 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 SEC22BO75396 215 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 RFC2P35250 354 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms