RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 DDX39BQ13838 428 aaKnown RBP13.41□□□□□ -0.26
CLK3-203ENST00000454830 ZNF423Q2M1K9 1284 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 PIGGQ5H8A4 983 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 C6orf10Q5SRN2 563 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 ZDHHC20Q5W0Z9 365 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 AAGABQ6PD74 315 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 RAVER1Q8IY67 606 aaKnown RBP13.41□□□□□ -0.26
CLK3-203ENST00000454830 OR2T11Q8NH01 316 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 PDLIM5Q96HC4 596 aaKnown RBP13.41□□□□□ -0.26
CLK3-203ENST00000454830 LRCH3Q96II8 777 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 ZNF184Q99676 751 aaPredicted RBP13.41□□□□□ -0.26
CLK3-203ENST00000454830 EGFL7Q9UHF1 273 aa13.41□□□□□ -0.26
CLK3-203ENST00000454830 CCDC154A6NI56 674 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 ULK1O75385 1050 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 ZNF30P17039 623 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 CAPN3P20807 821 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 CD9P21926 228 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 PEX2P28328 305 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 ABRAXAS2Q15018 415 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 C6orf136Q5SQH8 315 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 IL23RQ5VWK5 629 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 PPP2R2DQ66LE6 453 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 VRK3Q8IV63 474 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 MMAAQ8IVH4 418 aaKnown RBP13.4□□□□□ -0.26
CLK3-203ENST00000454830 SFTPA1Q8IWL2 248 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 MCOLN3Q8TDD5 553 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 SUSD6Q92537 303 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 SMARCD2Q92925 531 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 MRGPRX3Q96LB0 322 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 CD244Q9BZW8 370 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 THG1LQ9NWX6 298 aaKnown RBP13.4□□□□□ -0.26
CLK3-203ENST00000454830 GMPR2Q9P2T1 348 aaKnown RBP13.4□□□□□ -0.26
CLK3-203ENST00000454830 DENND4CQ5VZ89 1909 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 K7EPI3 171 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 SH3BGRLO75368 114 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 SEC22BO75396 215 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 SLC22A3O75751 556 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 HALP42357 657 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 PREPP48147 710 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 RAET1GQ6H3X3 334 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 PARS2Q7L3T8 475 aaKnown RBP13.4□□□□□ -0.26
CLK3-203ENST00000454830 TRAPPC5Q8IUR0 188 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 PIP4K2CQ8TBX8 421 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 FRS2Q8WU20 508 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 OR8D1Q8WZ84 308 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 MED8Q96G25 268 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 FARSBQ9NSD9 589 aaKnown RBP13.4□□□□□ -0.26
CLK3-203ENST00000454830 GID8Q9NWU2 228 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 SARDHQ9UL12 918 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 PCDHGA7Q9Y5G6 932 aa13.4□□□□□ -0.26
CLK3-203ENST00000454830 TAPBPO15533 448 aa13.4□□□□□ -0.27
CLK3-203ENST00000454830 EPHX1P07099 455 aa13.4□□□□□ -0.27
CLK3-203ENST00000454830 DNAJC5GQ8N7S2 189 aa13.4□□□□□ -0.27
CLK3-203ENST00000454830 CLHC1Q8NHS4 586 aa13.4□□□□□ -0.27
CLK3-203ENST00000454830 RHBDF1Q96CC6 855 aa13.4□□□□□ -0.27
CLK3-203ENST00000454830 ZNF490Q9ULM2 529 aaPredicted RBP13.4□□□□□ -0.27
CLK3-203ENST00000454830 AURKCQ9UQB9 309 aa13.4□□□□□ -0.27
CLK3-203ENST00000454830 OTOL1A6NHN0 477 aaPredicted RBP13.39□□□□□ -0.27
CLK3-203ENST00000454830 OR7A17O14581 309 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 KLK8O60259 260 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 ASLP04424 464 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 CYP2A7P20853 494 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 ATP6V1C1P21283 382 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 PTPN5P54829 565 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 NAA20P61599 178 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 RTL10Q7L3V2 364 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 SPATA19Q7Z5L4 167 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 RETREG3Q86VR2 466 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 WFIKKN2Q8TEU8 576 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 VCX3BQ9H321 246 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 MRPL40Q9NQ50 206 aaKnown RBP13.39□□□□□ -0.27
CLK3-203ENST00000454830 PDE10AQ9Y233 779 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 V9GYQ6 96 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 ANTXRLA6NF34 631 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 TPST1O60507 370 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 PRNPP04156 253 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 GGT5P36269 586 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 ERVK-8P63133 956 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 PCBP2Q15366 365 aaKnown RBP eCLIP13.39□□□□□ -0.27
CLK3-203ENST00000454830 GSTA3Q16772 222 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 SAMD4BQ5PRF9 694 aaKnown RBP13.39□□□□□ -0.27
CLK3-203ENST00000454830 DNAJC14Q6Y2X3 702 aaPredicted RBP13.39□□□□□ -0.27
CLK3-203ENST00000454830 GALNT4Q8N4A0 578 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 NUDT8Q8WV74 236 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 ASZ1Q8WWH4 475 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 FOXJ1Q92949 421 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 NKX2-4Q9H2Z4 354 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 ELOVL6Q9H5J4 265 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 SLC28A3Q9HAS3 691 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 YBX2Q9Y2T7 364 aaKnown RBP13.39□□□□□ -0.27
CLK3-203ENST00000454830 WNT9AO14904 365 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 TSPAN6O43657 245 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 MMP20O60882 483 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 GPR1P46091 355 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 PSMD8P48556 350 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 NEK2P51955 445 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 LRP8Q14114 963 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 PLA2G4EQ3MJ16 856 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 DOK6Q6PKX4 331 aa13.39□□□□□ -0.27
CLK3-203ENST00000454830 TMEM220Q6QAJ8 160 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms